YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Nplp3-PA
Organism: Drosophila melanogaster
Length: 90 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Nplp3-PA.

Description E-value Query
Range
Subject
Range
NPLP3_DROYA - Neuropeptide-like 3 OS=Drosophila yakuba GN=Nplp3 PE=3 SV=1
77.0 [0..1] [90..1]
gi|54641302|gb|E... - GA12013-PA [Drosophila pseudoobscura], GA12013 [Drosophila pseudoobscura pseudoobscura]
gi|125977044, gi... - gi|54641302|gb|EAL30052.1| GA12013 [Drosophila pseudoobscura pseudoobscura], gi|125977044|ref|XP_001...
66.0 [0..1] [90..1]

Back

Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKLCVFVAL LSLAAAAPAP APAPAPAPGL IGPGIVAPGI WGPTVVGSPL LAPQVVSVVP  60
   61 GAISHAAITQ VHPSPLLIKS VHGLGPVVIG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.592 a.60.3 C-terminal domain of RNA polymerase alpha subunit
View Download 0.570 a.77.1 DEATH domain
View Download 0.533 d.26.3 Chitinase insertion domain
View Download 0.510 a.4.1 Homeodomain-like
View Download 0.487 d.45.1 ClpS-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle