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View Structure Prediction Details

Protein: Atu-PA
Organism: Drosophila melanogaster
Length: 725 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Atu-PA.

Description E-value Query
Range
Subject
Range
LEO1 - Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
gi|114657092 - gi|114657092|ref|XP_510408.2| PREDICTED: Leo1, Paf1/RNA polymerase II complex component, homolog iso...
306.0 [0..5] [685..10]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSQNSDDDS GSSGSSRSGS RSVTPQGGSA PGSQRSRRSG SGSDRSRSGS RSSRSRSGSG  60
   61 SPRSARSGSA ESRHSQLSGS AR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKRSRSAHSR RSGSARSRKS GTPESPQSHR SGSLQSRKSG SPQSRRSGSP QSRKSGSTHS  60
   61 RRSGSAHSRR SGSARSRKSG SAQSDRSESR SRSHSGSLKG NEESRSNSPN LQIDVERANS 120
  121 KSGSRSRSRS RSGSRTSRSR SKTGTPSPNR SRSGSASGSG SDVGVPKKKA RKASGSDQEK 180
  181 KKSGSDSDIE ESPTKAKKSR LIDTDSDSNQ DVGKKAPAAA DIFGDADDIS DDEDEAGPAA 240
  241 RKSPVRSKSR SQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [335-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKSHSHSRSM SHSRSRSRSR SRDKVESQVE SAPKEDEPEP LPETRIDVEI PRISADLGKE  60
   61 QHFIKLPNFL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [405-519]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVVTHPFDPE TYEDEIDEEE TMDEEGRQRI KLKVSNTIRW REYMNNKGDM VRESNARFVR  60
   61 WSDGSMSLHL GNEIFDAYRQ PLLGDHNHLF VRQGTGLQGQ SVFRTKLTFR PHSTE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [520-725]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFTHKKMTMS LADRSSKTSG IKILTQVGKD PTTDRPTQLR EEEAKLRQAM RNQHKSLPKK  60
   61 KKPGAGEPLI GGGTSSYQHD EGSDDENAIS LSAIKNRYKK GSGAGQAEVK ASTIYSSDED 120
  121 EGSDFEARRS KKVDKAKASK ALRDSDSESD AGSAKSGHSN KSGGEGGSAS GSENEGSQKS 180
  181 GGGSSKSASG SGSGSGSGSG SGSDND

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle