YRC Public Data Repository - Protein Structure Prediction

Protein:	sunz-PA
Organism:	Drosophila melanogaster
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sunz-PA.

Description	E-value	Query Range	Subject Range
gi\|50748592 - gi\|50748592\|ref\|XP_421316.1\| PREDICTED: similar to calmodulin 1; Calmodulin 1 (phosphorylase kinase,...	172.0	[0..15]	[181..497]
gi\|94471603 - gi\|94471603\|gb\|ABF21069.1\| mitochondrial calcium sensor cameleon 4mtD3cpv [synthetic construct]	160.0	[0..22]	[181..355]
gi\|114677917 - gi\|114677917\|ref\|XP_512771.2\| PREDICTED: similar to calmodulin [Pan troglodytes]	155.0	[0..27]	[181..120]
gi\|76628526 - gi\|76628526\|ref\|XP_874377.1\| PREDICTED: similar to calmodulin 1 [Bos taurus]	155.0	[0..26]	[181..73]
gi\|109001730 - gi\|109001730\|ref\|XP_001098851.1\| PREDICTED: similar to Neuron-specific calcium-binding protein hippo...	154.0	[0..9]	[201..214]
gi\|54290235, gi\|... - gi\|54290235\|dbj\|BAD61167.1\| putative calcium-dependent protein kinase [Oryza sativa Japonica Group],...	152.0	[0..2]	[191..524]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRIDLTLDD MANNKFLTMY STLIKSFAAS TEFSTNEVVS LLIVFYKYAL NNRSRMMSTS  60
   61 QLYNLFLVSF GIFDVTIIDR ISMNITQDGR SVSPEAWMRL FCVFFNGSLQ ERMKFAFEVY 120
  121 TSGGAVVLNR EVVGVAIEQF FTGDDDDEVN ELRADMCEFI FGKFDTDKDG VIAFEEYAEI 180
  181 VQNQPGLLEF LGKIFPDDKD RSLVAYCHNI ESMFPPEGLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1bjfA
Description:	Neurocalcin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.25835303609582	bayes_pls_golite062009
protein binding	1.24489672575716	bayes_pls_golite062009
cation binding	0.399362460077626	bayes_pls_golite062009
metal ion binding	0.399362460077626	bayes_pls_golite062009
ion binding	0.3938291045473	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: