YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9603-PA
Organism:	Drosophila melanogaster
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9603-PA.

Description	E-value	Query Range	Subject Range
CX7A1_BOVIN - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Bos taurus GN=COX7A1 PE=1 SV=2	128.0	[0..2]	[89..4]
CX7A1_PRECR - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Presbytis cristata GN=COX7A1 PE=3 SV=1 CX7A1_TRACR - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Trachypithecus cristatus GN=COX7A1 PE=3 SV=1	127.0	[0..2]	[88..4]
gi\|8117716 - gi\|8117716\|gb\|AAF72738.1\| cytochrome c oxidase polypeptide VIIa-heart precursor [Pongo pygmaeus]	125.0	[0..4]	[88..1]
gi\|60655793, gi\|... - gi\|60655793\|gb\|AAX32460.1\| cytochrome c oxidase subunit VIIa polypeptide 1 [synthetic construct], gi... COX7A1 - cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)	125.0	[0..2]	[88..4]
CX7A1_PIG - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Sus scrofa GN=COX7A1 PE=3 SV=1	125.0	[0..2]	[89..4]
gi\|60652707, gi\|... - gi\|60652709\|gb\|AAX29049.1\| cytochrome c oxidase subunit VIIa polypeptide 1 [synthetic construct], gi...	124.0	[0..2]	[88..4]
CX7A1_MOUSE - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Mus musculus GN=Cox7a1 PE=1 SV=1	124.0	[0..2]	[89..4]
CX7A1_SAISC - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Saimiri sciureus GN=COX7A1 PE=3 SV=1	123.0	[0..3]	[89..5]
gi\|56609206 - gi\|56609206\|gb\|AAW03192.1\| mitochondrial cytochrome c oxidase subunit 7AH [Tarsius syrichta]	123.0	[0..2]	[89..4]
gi\|73948429 - gi\|73948429\|ref\|XP_855440.1\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIIa-heart, mito...	122.0	[0..2]	[89..4]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNLSRAVVR SFATTAGRRS AAVPKDQIEK GYFEIRKVQE HFQKKDGKPV FLKGSVVDNV  60
   61 LYRVTVALAL VGIGGMGKLF YELSVPKKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1occJ
Description:	Mitochondrial cytochrome c oxidase subunit VIIa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	11.547921589262	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	11.547921589262	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	11.547921589262	bayes_pls_golite062009
heme-copper terminal oxidase activity	11.2367009561744	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.11104947100445	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	4.9618269951103	bayes_pls_golite062009
oxidoreductase activity	4.50321341105356	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.38045398896932	bayes_pls_golite062009
cation transmembrane transporter activity	4.15699135499125	bayes_pls_golite062009
ion transmembrane transporter activity	3.9727416488415	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.5901432895995	bayes_pls_golite062009
substrate-specific transporter activity	3.41589237614147	bayes_pls_golite062009
catalytic activity	0.287695754348243	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: