YRC Public Data Repository - Protein Structure Prediction

Protein:	Ho-PA
Organism:	Drosophila melanogaster
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ho-PA.

Description	E-value	Query Range	Subject Range
gi\|71671435, gi\|... - gi\|71675319\|ref\|ZP_00673064.1\| Heme oxygenase (decyclizing) [Trichodesmium erythraeum IMS101], gi\|71...	298.0	[0..23]	[250..1]
gi\|31415692 - gi\|31415692\|gb\|AAP45707.1\| heme oxygenase 1 [Expression vector pAT101]	294.0	[0..21]	[252..23]
gi\|22297908, gi\|... - gi\|22297908\|ref\|NP_681155.1\| heme oxygenase 1 [Thermosynechococcus elongatus BP-1], gi\|22294086\|dbj\|...	293.0	[0..23]	[251..2]
gi\|33864707, gi\|... - gi\|33864707\|ref\|NP_896266.1\| Heme oxygenase [Synechococcus sp. WH 8102], gi\|33632230\|emb\|CAE06686.1\|...	292.0	[0..23]	[250..1]
HO1_SYNY3 - Heme oxygenase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=pbsA1 PE=1 SV=1 gi\|7433265, gi\|5... - pir\|\|S74713 heme oxygenase (decyclizing) (EC 1.14.99.3) 1 - Synechocystis sp. (strain PCC 6803), gi... HO1_SYNY3 - Heme oxygenase 1 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=pbsA1 PE=1 SV=1	290.0	[0..23]	[252..1]
gi\|116074454, gi... - gi\|116074454\|ref\|ZP_01471716.1\| Heme oxygenase [Synechococcus sp. RS9916], gi\|116069759\|gb\|EAU75511....	289.0	[0..23]	[250..1]
gi\|186681144, gi... - gi\|4105611\|gb\|AAD02479.1\| heme oxygenase; HO1 [Nostoc punctiforme], gi\|23124602\|ref\|ZP_00106581.1\| C...	288.0	[0..23]	[251..1]
HO1_NOSS1 - Heme oxygenase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=pbsA1 PE=3 SV=1 gi\|25285771 - pir\|\|AC2043 heme oxygenase [imported] - Nostoc sp. (strain PCC 7120)	287.0	[0..23]	[251..1]
gi\|78168074, gi\|... - gi\|78183780\|ref\|YP_376214.1\| Heme oxygenase (decyclizing) [Synechococcus sp. CC9902], gi\|78168074\|gb...	287.0	[0..21]	[250..5]
gi\|46134509, gi\|... - gi\|75909971\|ref\|YP_324267.1\| Heme oxygenase [Anabaena variabilis ATCC 29413], gi\|75703696\|gb\|ABA2337...	285.0	[0..23]	[251..1]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASEETIAD SQVSENVEDV EFVDMAFTKE LRKATKDVHN LTDVLVNAKI ALALSDDEVW  60
   61 YDGLLAFYEL YKFFETHLPE RLLPKEFHRT AAFERDFAYF YGSDWRKDYE IRPAVQKYLE 120
  121 HLEKIAAQNE LLLFAYSYQM YMALMSGGQM LQKKRMIARK MWIFSKNDDE EQQKQADKEA 180
  181 ELATARAADG SVDKDDLEAR PMPAQVTICP PGCEATYFPE KISVLKAKLR RVFNNHYGAF 240
  241 DDDLRAAFIE ESRNVFRLNI EVVRTIKGVN RANLRKLALA LIFVSSIVVA VKFALK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.69897
Match:	1we1A
Description:	Crystal structure of heme oxygenase-1 from cyanobacterium Synechocystis sp. PCC6803 in complex with heme
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits