YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9722-PA
Organism:	Drosophila melanogaster
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9722-PA.

Description	E-value	Query Range	Subject Range
gi\|73974854 - gi\|73974854\|ref\|XP_532348.2\| PREDICTED: similar to glutamate receptor, ionotropic, N-methyl D-aspara...	231.0	[0..5]	[263..220]
gi\|109087974, gi... - gi\|109087976\|ref\|XP_001098441.1\| PREDICTED: similar to glutamate receptor, ionotropic, N-methyl D-as...	228.0	[0..5]	[263..99]
GRINA - glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	227.0	[0..5]	[263..99]
gi\|114622146 - gi\|114622146\|ref\|XP_520009.2\| PREDICTED: similar to Glutamate receptor, ionotropic, N-methyl D-aspar...	224.0	[0..5]	[263..99]
AGAP005528-PA - \|protein_coding\|2L:16650094:16651262:1\|gene:AGAP005528 gi\|118786613, gi... - gi\|118786613\|ref\|XP_001237680.1\| AGAP005528-PA [Anopheles gambiae str. PEST], gi\|116126408\|gb\|EAU764...	216.0	[0..6]	[263..18]
gi\|56090429, gi\|... - gi\|56090429\|ref\|NP_001007714.1\| transmembrane BAX inhibitor motif containing 1 [Rattus norvegicus], ...	215.0	[0..4]	[264..41]
gi\|147904118, gi... - gi\|27503256\|gb\|AAH42223.1\| Grina-prov protein [Xenopus laevis], gi\|147904118\|ref\|NP_001080331.1\| NMD...	214.0	[0..5]	[261..114]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDILQEPVH QYGNRSHQAE CIPLGRYTAY GSEIGQDDPD KGLGFCSASI RRGFIRKVYL  60
   61 ILLAQLITSL VVIVSLTADK RVRLMVAE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STWIFVVAIL IVVFSLVALG CNEDLRRQTP ANFIFLSAFT IAESFLLGVA ACRYAPMEIF  60
   61 MAVLITASVC LGLTLFALQT RYDFTVMGGL LVSCLIILLF FGIVTIFVGG HMVTTIYASL 120
  121 SALLFSVYLV YDTQLMMGGK HRYSISPEEY IFAALNIYMD VMNIFLDILQ LIGGSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits