YRC Public Data Repository - Protein Structure Prediction

Protein:	Surf4-PA
Organism:	Drosophila melanogaster
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Surf4-PA.

Description	E-value	Query Range	Subject Range
gi\|76671951 - gi\|76671951\|ref\|XP_604404.2\| PREDICTED: similar to SURF-4 [Bos taurus]	360.0	[0..5]	[270..89]
gi\|33086478 - gi\|33086478\|gb\|AAP92551.1\| Ab1-205 [Rattus norvegicus]	359.0	[0..5]	[270..4]
gi\|145013229, gi... - gi\|39959108\|ref\|XP_364464.1\| hypothetical protein MGG_09309 [Magnaporthe grisea 70-15], gb\|EAA55502....	351.0	[0..6]	[268..37]
gi\|85113270 - gi\|85113270\|ref\|XP_964496.1\| hypothetical protein NCU03319 [Neurospora crassa OR74A] gi\|32420623, gi\|... - gi\|32420623\|ref\|XP_330755.1\| hypothetical protein [Neurospora crassa], gi\|28926280\|gb\|EAA35260.1\| hy...	347.0	[0..7]	[268..38]
gi\|66850178, gi\|... - gi\|70995576\|ref\|XP_752543.1\| COPII-coated vesicle protein SurF4/Erv29 [Aspergillus fumigatus Af293],... gi\|159131298 - gi\|159131298\|gb\|EDP56411.1\| COPII-coated vesicle protein SurF4/Erv29, putative [Aspergillus fumigatu...	345.0	[0..6]	[268..38]
gi\|157118919, gi... - gi\|94469220\|gb\|ABF18459.1\| surfeit 4 cargo protein [Aedes aegypti], gi\|157118919\|ref\|XP_001659248.1\|...	344.0	[0..1]	[270..1]
gi\|169781458 - gi\|169781458\|ref\|XP_001825192.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238498238, gi... - gi\|238498238\|ref\|XP_002380354.1\| COPII-coated vesicle protein SurF4/Erv29, putative [Aspergillus fla... gi\|83773934 - gi\|83773934\|dbj\|BAE64059.1\| unnamed protein product [Aspergillus oryzae]	343.0	[0..6]	[268..38]
gi\|115491671, gi... - gi\|115491671\|ref\|XP_001210463.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	342.0	[0..6]	[268..38]
gi\|194764849, gi... - gi\|194764849\|ref\|XP_001964540.1\| GF23237 [Drosophila ananassae], gi\|190614812\|gb\|EDV30336.1\| GF23237... gi\|194116786, gi... - gi\|195158274\|ref\|XP_002020017.1\| GL13757 [Drosophila persimilis], gi\|194116786\|gb\|EDW38829.1\| GL1375... gi\|54637649, gi\|... - gi\|54637649\|gb\|EAL27051.1\| GA19436 [Drosophila pseudoobscura pseudoobscura], gi\|125773313\|ref\|XP_001... gi\|125773313\|ref... - GA19436-PA [Drosophila pseudoobscura], GA19436 [Drosophila pseudoobscura pseudoobscura]	341.0	[0..1]	[270..1]
ENSPTRT00000039854 - null gi\|123997081, gi... - gi\|123997081\|gb\|ABM86142.1\| surfeit 4 [synthetic construct], gi\|123982418\|gb\|ABM82950.1\| surfeit 4 [... SURF4 - surfeit 4 SURF4_PONPY - Surfeit locus protein 4 - Pongo pygmaeus (Orangutan) SURF4_PONAB - Surfeit locus protein 4 OS=Pongo abelii GN=SURF4 PE=2 SV=1	341.0	[0..5]	[270..4]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPNEYIAK TEDVAEQVIK RGKNVLPTVA RLCLIATFFE DGLRMYIQWN EQREYMDMSW  60
   61 GCGKFLATVF VLVNLLGQLG GCGMVMARFK VDIAVGLLFF IVVLQTVAYS ILWDFQFLLR 120
  121 NFALIGALLL VLAEARIEGR SLFAGVPSMG ENKP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [155-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNFMQLAGRI LLAFMFITLI RFELSVWQVI QDIIGSILMV LVVLGYKTKL SALILVALLT  60
   61 ILNLYHNAWW TIPSYKPLRD FLKYDFFQTL SVIGGLLMIV SLGPGGVSMD EHKKKW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits