YRC Public Data Repository - Protein Structure Prediction

Protein:	Scp2-PA
Organism:	Drosophila melanogaster
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Scp2-PA.

Description	E-value	Query Range	Subject Range
gi\|50748592 - gi\|50748592\|ref\|XP_421316.1\| PREDICTED: similar to calmodulin 1; Calmodulin 1 (phosphorylase kinase,...	179.0	[0..3]	[165..515]
gi\|94471603 - gi\|94471603\|gb\|ABF21069.1\| mitochondrial calcium sensor cameleon 4mtD3cpv [synthetic construct]	167.0	[0..3]	[182..366]
gi\|76628526 - gi\|76628526\|ref\|XP_874377.1\| PREDICTED: similar to calmodulin 1 [Bos taurus]	159.0	[0..3]	[165..80]
gi\|114677917 - gi\|114677917\|ref\|XP_512771.2\| PREDICTED: similar to calmodulin [Pan troglodytes]	157.0	[0..3]	[165..126]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISDFRKKK LLFLFNVFFD VNQSGEIDVK DFELAIERVC QLRGWQKDTP KNKETYDLMM  60
   61 EIWTGLRSKA DKDNDGQVSV DEWCNMWDAY AKDPSSVMDW QNAYMNFMFD LEDASHDGGI 120
  121 DVTEFTLVCS SYGLEKTECE EAFAKMSQGQ SEVTREQFAA LWKEYFAAED VNAPGNYIFG 180
  181 KTSF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	2ccmA
Description:	X-ray structure of Calexcitin from Loligo pealei at 1.8A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits