YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7300905, gi\|5...
Organism:	Drosophila melanogaster
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7300905, gi|5....

Description	E-value	Query Range	Subject Range
FBpp0307015, Ccap-PA - The gene Cardioacceleratory peptide is referred to in FlyBase by the symbol Dmel\Ccap (CG4910, FBgn0... gi\|220952330, gi... - gi\|220958746\|gb\|ACL91916.1\| Ccap-PA [synthetic construct], gi\|220952330\|gb\|ACL88708.1\| Ccap-PA [synt...	230.0	[0..1]	[151..5]
gi\|125773739, gi... - gi\|54637863\|gb\|EAL27265.1\| GA18518-PA [Drosophila pseudoobscura], gi\|125773739\|ref\|XP_001358128.1\| G...	204.0	[0..1]	[150..1]
CCAP_MANSE - Cardioactive peptide OS=Manduca sexta GN=CCAP PE=1 SV=1	169.0	[0..14]	[137..18]
AGAP009729-PA - CCAP: cardioacceleratory peptide\|protein_coding\|3R:41853237:41853793:1\|gene:AGAP009729 gi\|116118097, gi... - gi\|118790772\|ref\|XP_318812.3\| cardioacceleratory peptide (AGAP009729-PA) [Anopheles gambiae str. PES...	125.0	[0..6]	[139..9]
gi\|157106157, gi... - gi\|157106157\|ref\|XP_001649193.1\| cardioacceleratory peptide 2a, putative [Aedes aegypti], gi\|1088841...	122.0	[0..7]	[138..9]
gi\|91077426 - gi\|91077426\|ref\|XP_975431.1\| PREDICTED: similar to crustacean cardioactive peptide [Tribolium castan...	109.0	[0..39]	[139..36]
CCAP_PERAM - Cardioactive peptide OS=Periplaneta americana GN=CCAP PE=2 SV=1	88.0	[0..45]	[122..49]
gi\|78523092 - gi\|78523092\|gb\|ABB46291.1\| crustacean cardioactive peptide [Carcinus maenas]	63.0	[0..46]	[140..49]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRISLRLLAL LACAICSQAS LERENNEGTN MANHKLSGVI QWKYEKRPFC NAFTGCGRKR  60
   61 TYPSYPPFSL FKRNEVEEKP YNNEYLSEGL SDLIDINAEP AVENVQKQIM SQAKIFEAIK 120
  121 EASKEIFRQK NKQKMLQNEK EMQQLEERES K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.209	c.25.1	Ferredoxin reductase-like, C-terminal NADP-linked domain
View	Download	0.207	a.144.1	PABC (PABP) domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits