| Protein: | orb-PE, orb-PC |
| Organism: | Drosophila melanogaster |
| Length: | 559 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for orb-PE, orb-PC.
| Description | E-value | Query Range |
Subject Range |
|
|
374.0 | [0..34] | [556..11] |
|
Region A: Residues: [1-208] |
1 11 21 31 41 51
| | | | | |
1 MAKVLRVNLL SVNSNKIPHQ QQQQQQQQQQ QQQQQQQNQQ QLQVQQQHQL QQQFVNLNRN 60
61 YEQQISANLG SQQHGFEHNG VGVGASSSGN ENCFSQYNLE NITSVDMELA KLQNLQRINT 120
121 LKLLHAQAQQ MPLINQLLQS YAGNAIGSVG GSNLGNLMSA GGSSLMTEMA GNVGGIITTN 180
181 DGHLDRVAKF YKSSAALCDA TCTWSGHL
|
| Detection Method: |  |
| Confidence: | 35.69897 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.63987691433124 | bayes_pls_golite062009 |
| nucleic acid binding | 3.64594243387558 | bayes_pls_golite062009 |
| mRNA binding | 3.54495985180603 | bayes_pls_golite062009 |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| 1.71820051628117 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.862661444935922 | bayes_pls_golite062009 |
| transcription regulator activity | 0.737458867828906 | bayes_pls_golite062009 |
| DNA binding | 0.691258294213766 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.366758605553422 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| transcription activator activity | 0.119266921032347 | bayes_pls_golite062009 |
| structural molecule activity | 0.0829058000493267 | bayes_pls_golite062009 |
|
Region A: Residues: [209-416] |
1 11 21 31 41 51
| | | | | |
1 PPRSHRMLNY SPKVFLGGIP WDISEQSLIQ IFKPFGSIKV EWPGKEQQAA QPKGYVYIIF 60
61 ESDKQVKALL SACVLQVDDS HCGRNYFFKI SSRRIKSKDV EVIPWIIADS NFVRSSSQKL 120
121 DPTKTVFVGA LHGKLTAEGL GNIMDDLFDG VLYAGIDTDK YKYPIGSGRV TFSNFRSYMK 180
181 AVSAAFIEIR TTKFTKKVQV DPYLEDAL
|
| Detection Method: | |
| Confidence: | 42.522879 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.63987691433124 | bayes_pls_golite062009 |
| nucleic acid binding | 3.64594243387558 | bayes_pls_golite062009 |
| mRNA binding | 3.54495985180603 | bayes_pls_golite062009 |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| 1.71820051628117 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.862661444935922 | bayes_pls_golite062009 |
| transcription regulator activity | 0.737458867828906 | bayes_pls_golite062009 |
| DNA binding | 0.691258294213766 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.366758605553422 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| transcription activator activity | 0.119266921032347 | bayes_pls_golite062009 |
| structural molecule activity | 0.0829058000493267 | bayes_pls_golite062009 |
|
Region A: Residues: [417-559] |
1 11 21 31 41 51
| | | | | |
1 CSICGVQHGP YYCRELSCFR YFCRSCWQWQ HSCDIVKNHK PLTRNSKSQS LVGIGPSSSN 60
61 VSLPFSGQRS IRDNRMGNGQ HQQHQQHQYQ QQKHRQLQEY SQPHSLNVMG NSGAANAAAT 120
121 SMVTLQQRQI HKVRIQRQQH QAI
|
| Detection Method: | |
| Confidence: | 5.045757 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
