YRC Public Data Repository - Protein Structure Prediction

Protein:	Sld5-PA
Organism:	Drosophila melanogaster
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sld5-PA.

Description	E-value	Query Range	Subject Range
gi\|76655942 - gi\|76655942\|ref\|XP_874005.1\| PREDICTED: similar to SLD5 [Bos taurus]	244.0	[0..18]	[228..272]
gi\|73979207 - gi\|73979207\|ref\|XP_539958.2\| PREDICTED: similar to SLD5 [Canis familiaris]	234.0	[0..18]	[228..74]
SLD5_MOUSE - DNA replication complex GINS protein SLD5 OS=Mus musculus GN=Gins4 PE=1 SV=1	233.0	[0..15]	[228..3]
GINS4 - GINS complex subunit 4 (Sld5 homolog)	232.0	[0..18]	[228..6]
gi\|109086239 - gi\|109086239\|ref\|XP_001094432.1\| PREDICTED: similar to SLD5 [Macaca mulatta]	231.0	[0..18]	[228..6]
gi\|114619902 - gi\|114619902\|ref\|XP_001138293.1\| PREDICTED: SLD5 [Pan troglodytes]	231.0	[0..18]	[228..6]
SLD5_RAT - DNA replication complex GINS protein SLD5 OS=Rattus norvegicus GN=Gins4 PE=1 SV=1	230.0	[0..15]	[228..3]
gi\|46249482, gi\|... - gi\|46249482\|gb\|AAH68670.1\| MGC81062 protein [Xenopus laevis], gi\|29365477\|dbj\|BAC66457.1\| Sld5 [Xeno...	219.0	[0..16]	[228..1]
gi\|116116659, gi... - gi\|118795200\|ref\|XP_321995.3\| ENSANGP00000004127 [Anopheles gambiae str. PEST], gi\|116116659\|gb\|EAA0...	218.0	[0..31]	[228..31]
gi\|54638908, gi\|... - gi\|54638908\|gb\|EAL28310.1\| GA13074 [Drosophila pseudoobscura pseudoobscura], gi\|125776092\|ref\|XP_001... gi\|54638908\|gb\|E... - GA13074-PA [Drosophila pseudoobscura], GA13074 [Drosophila pseudoobscura pseudoobscura]	216.0	[0..1]	[228..1]

Back

Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVEDVPET QLEIDVSDGA GLEDEDDDDM EQITAQKVLE IIETAWINEM CAPEILPSQT  60
   61 DMLELMVSQV AHMEEQMRDL DKNDFRAVVH SMELERVRYI MASYLRCRLQ KIETFTQHIL 120
  121 NQEESREPDD KRLSPEETKF AQEFASNVDE YFHKVATQYM PNQQRGEAEQ RIVTPNLMSH 180
  181 VFLKANVAVP AVIVGVDDEE VDMAAGSQHI IPYQLVADLI QNNQAQLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.154902
Match:	2e9xD
Description:	No description for 2e9xD was found.

Predicted functions:

Term	Confidence	Notes
3'-5' DNA helicase activity	2.73617158646595	bayes_pls_golite062009
binding	1.86366637427031	bayes_pls_golite062009
protein binding	1.52285169518311	bayes_pls_golite062009
transcription regulator activity	0.797357482444881	bayes_pls_golite062009
DNA helicase activity	0.157803422287271	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: