| Protein: | raps-PA |
| Organism: | Drosophila melanogaster |
| Length: | 658 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for raps-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
339.0 | [0..1] | [658..1] |
|
Region A: Residues: [1-290] |
1 11 21 31 41 51
| | | | | |
1 MSSLSASAEN VSSLGLGSGG GGTTSHDGNS QQGSGSDGGS SMCLELALEG ERLCKAGDCR 60
61 AGVAFFQAAI QAGTEDLRTL SAIYSQLGNA YFYLGDYNKA MQYHKHDLTL AKSMNDRLGE 120
121 AKSSGNLGNT LKVMGRFDEA AICCERHLTL ARQLGDRLSE GRALYNLGNV YHAKGKHLGQ 180
181 RNPGKFGDDV KEALTRAVEF YQENLKLMRD LGDRGAQGRA CGNLGNTYYL LGDFQAAIEH 240
241 HQERLRIARE FGDRAAERRA NSNLGNSHIF LGQFEDAAEH YKRTLALAVE
|
| Detection Method: |  |
| Confidence: | 6.39794 |
| Match: | 1ouvA |
| Description: | Helicobacter cysteine rich protein C (HcpC) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.32969330984971 | bayes_pls_golite062009 |
| protein binding | 0.559882636047776 | bayes_pls_golite062009 |
|
Region A: Residues: [291-351] |
1 11 21 31 41 51
| | | | | |
1 LGEREVEAQS CYSLGNTYTL LHEFNTAIEY HNRHLAIAQE LGDRIGEARA CWSLGNAHSA 60
61 I
|
| Detection Method: | |
| Confidence: | 2.5 |
| Match: | 2ifuA |
| Description: | No description for 2ifuA was found. |
|
Region A: Residues: [352-584] |
1 11 21 31 41 51
| | | | | |
1 GGHERALKYA EQHLQLAKEL HDPVGESTAR VNISDLRKLL GMPDSEPSPT EEEARSTASD 60
61 HSASGNQSDG SENSQGRMVR VRRQSMEQLD LIKITPDGKR MQEEKLRAQA TRKAKDDDFF 120
121 EMLSRSQSKR MDDQRCSIKV NPAGAPAVAT GATRKPLVQQ NSLFVDPTNL PGLKSPSSAN 180
181 PSAIGHGPLA RSATTTQQPD DDFLDMLMRC QGSRLEEQRS ELPRPNVTMD AEA
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 1xnfA |
| Description: | Crystal structure of E.coli TPR-protein NlpI |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.07985546140154 | bayes_pls_golite062009 |
| protein binding | 1.6279032205159 | bayes_pls_golite062009 |
| signal sequence binding | 0.84653836601323 | bayes_pls_golite062009 |
| peptide binding | 0.646032841722384 | bayes_pls_golite062009 |
|
Region A: Residues: [585-658] |
1 11 21 31 41 51
| | | | | |
1 EAPPRSVPEA AVPGAPRGQT GRGATVPDED FFSLIMKVQS GRMEDQRASI PFRNANNNNN 60
61 SRSNNNGSAG GAGK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
