| Protein: | ligatin-PA |
| Organism: | Drosophila melanogaster |
| Length: | 563 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ligatin-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
574.0 | [0..1] | [560..100] |
|
Region A: Residues: [1-189] |
1 11 21 31 41 51
| | | | | |
1 MFLKPYRPKS SAALKGSDSK KFRQRVEAAF PHVSVDQLVP AKAAVTQVKI LTHGGVQSMV 60
61 YCVDKLPLFF ELDGGQLVPT LYTLWIVPDI LPYFTTHEGV LPKLTNGADL MLPGVVPLGV 120
121 GLSMYGHFKK GQLMAVNLTN NKSAVGVGQL ARSSDELYMC GGHGVAIKML HLFGDKLWSH 180
181 EPSLVQQIP
|
| Detection Method: |  |
| Confidence: | 29.69897 |
| Match: | 2ausC |
| Description: | No description for 2ausC was found. |
|
Region A: Residues: [190-305] |
1 11 21 31 41 51
| | | | | |
1 LVKTKALSGE DFPALGSETE RRKTASPATP APVTFATVAQ TEELETETAA LTLESQEAPE 60
61 SDEEAVEEAS PELILKNAFL SALKNHGKKL PLPLLTSNFY RLYVVTEATE QIDLKK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [306-459] |
1 11 21 31 41 51
| | | | | |
1 TRYKKLSNFL AEMVDQGFIV VREESKGVDK ITSVDLEHPE VVNFITDVKA SEANGAASET 60
61 PLFHSELKEM YIVTDVTAAF FTKLNYKRGE GIPAGQIKKI VREYVSKHGL LHPLTKLVRP 120
121 DDTLIELYGN REVSLSEMCS LITSKMEHSY QMCS
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1v32A |
| Description: | Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g08430 from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural molecule activity | 4.76083886363836 | bayes_pls_golite062009 |
| transcription regulator activity | 1.93337598023804 | bayes_pls_golite062009 |
| binding | 1.65769778151884 | bayes_pls_golite062009 |
| protein binding | 1.3501672529352 | bayes_pls_golite062009 |
| basal transcription repressor activity | 0.955353508790079 | bayes_pls_golite062009 |
| transcription repressor activity | 0.6943850197604 | bayes_pls_golite062009 |
| transcription activator activity | 0.51230769371834 | bayes_pls_golite062009 |
| transcription factor binding | 0.39586576704049 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.35852024786909 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.31113344049068 | bayes_pls_golite062009 |
| catalytic activity | 0.121624777548864 | bayes_pls_golite062009 |
|
Region A: Residues: [460-563] |
1 11 21 31 41 51
| | | | | |
1 GKDTSGKPLI QMSLATRSGN KKVTLVSNIE AYGIILAEFI KLCKQGAAAS TSVVKLPHQK 60
61 HEQLQIQGNQ VRFVHTLLTE TYKVPPKCIL GLELAKDGKK NKKK
|
| Detection Method: | |
| Confidence: | 27.221849 |
| Match: | 2if1A |
| Description: | HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| translation initiation factor activity | 6.56930940751046 | bayes_pls_golite062009 |
| translation regulator activity | 2.27579767245564 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 2.25914933413253 | bayes_pls_golite062009 |
| nucleic acid binding | 1.69119554284364 | bayes_pls_golite062009 |
| binding | 1.40632629011845 | bayes_pls_golite062009 |
| protein binding | 0.189517592830504 | bayes_pls_golite062009 |
