Protein: | ligatin-PA |
Organism: | Drosophila melanogaster |
Length: | 563 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ligatin-PA.
Description | E-value | Query Range |
Subject Range |
|
574.0 | [0..1] | [560..100] |
Region A: Residues: [1-189] |
1 11 21 31 41 51 | | | | | | 1 MFLKPYRPKS SAALKGSDSK KFRQRVEAAF PHVSVDQLVP AKAAVTQVKI LTHGGVQSMV 60 61 YCVDKLPLFF ELDGGQLVPT LYTLWIVPDI LPYFTTHEGV LPKLTNGADL MLPGVVPLGV 120 121 GLSMYGHFKK GQLMAVNLTN NKSAVGVGQL ARSSDELYMC GGHGVAIKML HLFGDKLWSH 180 181 EPSLVQQIP |
Detection Method: | |
Confidence: | 29.69897 |
Match: | 2ausC |
Description: | No description for 2ausC was found. |
Region A: Residues: [190-305] |
1 11 21 31 41 51 | | | | | | 1 LVKTKALSGE DFPALGSETE RRKTASPATP APVTFATVAQ TEELETETAA LTLESQEAPE 60 61 SDEEAVEEAS PELILKNAFL SALKNHGKKL PLPLLTSNFY RLYVVTEATE QIDLKK |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [306-459] |
1 11 21 31 41 51 | | | | | | 1 TRYKKLSNFL AEMVDQGFIV VREESKGVDK ITSVDLEHPE VVNFITDVKA SEANGAASET 60 61 PLFHSELKEM YIVTDVTAAF FTKLNYKRGE GIPAGQIKKI VREYVSKHGL LHPLTKLVRP 120 121 DDTLIELYGN REVSLSEMCS LITSKMEHSY QMCS |
Detection Method: | |
Confidence: | 3.522879 |
Match: | 1v32A |
Description: | Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g08430 from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
structural molecule activity | 4.76083886363836 | bayes_pls_golite062009 |
transcription regulator activity | 1.93337598023804 | bayes_pls_golite062009 |
binding | 1.65769778151884 | bayes_pls_golite062009 |
protein binding | 1.3501672529352 | bayes_pls_golite062009 |
basal transcription repressor activity | 0.955353508790079 | bayes_pls_golite062009 |
transcription repressor activity | 0.6943850197604 | bayes_pls_golite062009 |
transcription activator activity | 0.51230769371834 | bayes_pls_golite062009 |
transcription factor binding | 0.39586576704049 | bayes_pls_golite062009 |
transcription cofactor activity | 0.35852024786909 | bayes_pls_golite062009 |
transcription coactivator activity | 0.31113344049068 | bayes_pls_golite062009 |
catalytic activity | 0.121624777548864 | bayes_pls_golite062009 |
Region A: Residues: [460-563] |
1 11 21 31 41 51 | | | | | | 1 GKDTSGKPLI QMSLATRSGN KKVTLVSNIE AYGIILAEFI KLCKQGAAAS TSVVKLPHQK 60 61 HEQLQIQGNQ VRFVHTLLTE TYKVPPKCIL GLELAKDGKK NKKK |
Detection Method: | |
Confidence: | 27.221849 |
Match: | 2if1A |
Description: | HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
translation initiation factor activity | 6.56930940751046 | bayes_pls_golite062009 |
translation regulator activity | 2.27579767245564 | bayes_pls_golite062009 |
translation factor activity, nucleic acid binding | 2.25914933413253 | bayes_pls_golite062009 |
nucleic acid binding | 1.69119554284364 | bayes_pls_golite062009 |
binding | 1.40632629011845 | bayes_pls_golite062009 |
protein binding | 0.189517592830504 | bayes_pls_golite062009 |