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View Structure Prediction Details

Protein: Gycalpha99B-PA
Organism: Drosophila melanogaster
Length: 676 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Gycalpha99B-PA.

Description E-value Query
Range
Subject
Range
gi|16767968 - gi|16767968|gb|AAL28202.1| GH08311p [Drosophila melanogaster]
535.0 [0..1] [676..1]

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Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACPFFRRAD SLTRQPSVIA EPGGHWALED EELSDDALTL THLQMAIQLL TAPSNEDLNT  60
   61 AVTSLVAKYR QNWPNIHKLK LDPQTFKSCA NYDYLADIQE LLLKMDEASA SEILVLLGEE 120
  121 LITCCCTGII ERAFRCLGTD LQEFLGSLDG VYDVLKLQEE DVTDTGFVCA GEGELIFTSE 180
  181 RPVIAWLLLG SLKALTRMLY KVDVNIKIEP VEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 2o09A
Description: No description for 2o09A was found.

Predicted Domain #2
Region A:
Residues: [214-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DARRYRYLFS LVKDNSQTML MGRPTSVSKT IPETVQRSNS SNASDLQMNS SSFCKMFPWH  60
   61 FIMNEQLELV QLGRGFSKLY KPYMADFGCQ ATTYFDFKRP KGLTMKFRDI VRRTYTPFLI 120
  121 GLNNPPGAVD FPAIGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [350-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIKGQMVHCP ESNSLLFIGS PFLDGLDGLT CNGLFISDIP LHDATREVIL VGEQARAQDG  60
   61 LRRRMDKIKN SIEEANSAVT KERKKNVSLL HLIFPAEIAE KLWLGSSID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [459-676]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKTYPDVTIL FSDIVGFTSI CSRATPFMVI SMLEGLYKDF DEFCDFFDVY KVETIGDAYC  60
   61 VASGLHRASI YDAHKVAWMA LKMIDACSKH ITHDGEQIKM RIGLHTGTVL AGVVGRKMPR 120
  121 YCLFGHSVTI ANKFESGSEA LKINVSPTTK DWLTKHEGFE FELQPRDPSF LPKEFPNPGG 180
  181 TETCYFLESF RNPALDSELP LVEHINVSMK TISEGGDA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.30103
Match: 1yk9A
Description: Crystal structure of a mutant form of the mycobacterial adenylyl cyclase Rv1625c
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle