| Protein: | CG11318-PA |
| Organism: | Drosophila melanogaster |
| Length: | 802 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11318-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
400.0 | [0..13] | [801..1634] |
|
Region A: Residues: [1-284] |
1 11 21 31 41 51
| | | | | |
1 MNFNWCAGLF VVLALVSPIY SACPKENQMC LRNGTFQYCD GEERNSSDEL MQTHLVYCTS 60
61 MFCEPEEFQH DYITRNHDQT PHQNKWKRAR IGERATLHDV CLLRNGMPVT RECRVKDNRA 120
121 NWESTEHWDP VVCLRRFREH TISGDLNSLH DDVLEGRRRT NDTQGRREMT GIMRNMFRQR 180
181 GGNLLPADVH MTGQMFGALM QQDKDATVSV DLVSVCKEIM SCDSKVLRLS AQLNATNSLL 240
241 SQFESYMDAL PEQLVPKDRC GKVVAKPTSD EAETATTGVE TYNF
|
| Detection Method: |  |
| Confidence: | 3.045757 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor binding | 3.10014156620054 | bayes_pls_golite062009 |
| ErbB-3 class receptor binding | 2.42594378586851 | bayes_pls_golite062009 |
| binding | 2.33940742543305 | bayes_pls_golite062009 |
| ErbB-2 class receptor binding | 2.05600933520723 | bayes_pls_golite062009 |
| protein binding | 1.97546801934296 | bayes_pls_golite062009 |
| signal transducer activity | 1.66401431847753 | bayes_pls_golite062009 |
| molecular transducer activity | 1.66401431847753 | bayes_pls_golite062009 |
| growth factor activity | 1.21105583076744 | bayes_pls_golite062009 |
| epidermal growth factor receptor binding | 1.08974638257724 | bayes_pls_golite062009 |
| transcription factor binding | 0.0635904219837768 | bayes_pls_golite062009 |
|
Region A: Residues: [285-479] |
1 11 21 31 41 51
| | | | | |
1 SDIGVQALIT GNISVFFANP ECDRITGLAI FSAPGDQRKT SASGFWYRFI RFSEDLAKVK 60
61 EESNLETAAF LPENLWRQVK SRGATYLIFK VYAHDALFVE TSLQRTRKPR SKVISISIPG 120
121 LRSNYLSLPL PFLLRNENLR NPDSKAFSIG SGCGYWNYET WSTEGVSTES SSDLLKDAII 180
181 ECHTNHLTQF AFLVG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [480-802] |
1 11 21 31 41 51
| | | | | |
1 GSYRANDLGE EILITPINEK VLDIISIVGC SLSLLGILGI FLTAALFKSW RSQASTKVLL 60
61 HLCLAMCLQM MLFVFLNTDD VSEALVVNGN TVRCVALGAA MQYSILVLFS WMLIIAFLQF 120
121 QRYVTVIGIE RPPRYILKAA IVAWLLPLVP TLLVALIDPD SYVPSAAQLS TDTGICYPSG 180
181 YGLIFGVVLP VTLITVCNLV IFVYVFYSIS HSLSQSIHKN EKKMVVKQIR LSIMLFFLLG 240
241 LTWIFGIFAF MQAGVAFSYL FCITATMQGF VMFIYFVLLD STNRRLWVGL ICPTKMELDV 300
301 QKRTTELQSM TTSSTNYNSR SHQ
|
| Detection Method: | |
| Confidence: | 45.30103 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
