YRC Public Data Repository - Protein Structure Prediction

Protein:	CG11077-PA
Organism:	Drosophila melanogaster
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11077-PA.

Description	E-value	Query Range	Subject Range
gi\|110739253, gi... - gi\|30794097\|gb\|AAP40491.1\| unknown protein [Arabidopsis thaliana], gi\|110739253\|dbj\|BAF01540.1\| hypo...	185.0	[0..1]	[167..134]
gi\|73980664 - gi\|73980664\|ref\|XP_853776.1\| PREDICTED: similar to MpV17 transgene, murine homolog, glomeruloscleros...	181.0	[0..2]	[167..122]
gi\|115453925, gi... - gi\|50901268\|ref\|XP_463067.1\| putative peroxisomal membrane protein [Oryza sativa (japonica cultivar-...	181.0	[0..2]	[167..174]
MPV17_RAT - Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1	179.0	[0..5]	[167..14]
gi\|76621079 - gi\|76621079\|ref\|XP_876207.1\| PREDICTED: similar to CG32262-PA [Bos taurus]	179.0	[0..4]	[166..38]
gi\|34783266 - gi\|34783266\|gb\|AAH16289.2\| MPV17 protein [Homo sapiens]	179.0	[0..2]	[167..7]
gi\|187027843, gi... - gi\|39597838\|emb\|CAE68530.1\| Hypothetical protein CBG14354 [Caenorhabditis briggsae], gi\|187027843\|em... gi\|157769375 - gi\|157769375\|ref\|XP_001676508.1\| Hypothetical protein CBG14354 [Caenorhabditis briggsae AF16]	179.0	[0..2]	[168..53]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLKAYLKD GINVAAVMCL GDTISQFFFD KKSLDEWDAG RTLRFGIVGL VFVGPTLRRW  60
   61 YHFLESRVPK TYSPMRRGVT KMLVDQTLFA PPFTMA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.994	N/A	N/A	a.47.2	t-snare proteins

Predicted Domain #2

Region A:
Residues: [97-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLVPLSNG EPIDRIRQRI LDSYLSILVR NYMLWPAAQM LNFRFVPLGY QVLYAQFIAL  60
   61 VWNCYLSMIL NS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.853872
Match:	PF04117.3
Description:	No description for PF04117.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits