Protein: | sc-PA |
Organism: | Drosophila melanogaster |
Length: | 345 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sc-PA.
Description | E-value | Query Range |
Subject Range |
|
226.0 | [0..1] | [345..1] |
Region A: Residues: [1-89] |
1 11 21 31 41 51 | | | | | | 1 MKNNNNTTKS TTMSSSVLST NETFPTTINS ATKIFRYQHI MPAPSPLIPG GNQNQPAGTM 60 61 PIKTRKYTPR GMALTRCSES VSSLSPGSS |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [90-186] |
1 11 21 31 41 51 | | | | | | 1 PAPYNVDQSQ SVQRRNARER NRVKQVNNSF ARLRQHIPQS IITDLTKGGG RGPHKKISKV 60 61 DTLRIAVEYI RRLQDLVDDL NGGSNIGANN AVTQLQL |
Detection Method: | ![]() |
Confidence: | 12.30103 |
Match: | 1am9A |
Description: | SREBP-1a |
Matching Structure (courtesy of the PDB):![]() |
Term | Confidence | Notes |
transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
DNA binding | 5.18654839258297 | bayes_pls_golite062009 |
nucleic acid binding | 5.05768805749761 | bayes_pls_golite062009 |
transcription factor activity | 4.78039531631248 | bayes_pls_golite062009 |
binding | 3.81829206350975 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.39500382187264 | bayes_pls_golite062009 |
transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
transcription activator activity | 2.5495467409976 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity, enhancer binding | 2.42306484786159 | bayes_pls_golite062009 |
sequence-specific DNA binding | 2.31910036997977 | bayes_pls_golite062009 |
protein binding | 1.59929864805879 | bayes_pls_golite062009 |
transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
transcription repressor activity | 0.955588849035129 | bayes_pls_golite062009 |
promoter binding | 0.8576109846276 | bayes_pls_golite062009 |
transcription corepressor activity | 0.801830750183111 | bayes_pls_golite062009 |
transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
Region A: Residues: [187-345] |
1 11 21 31 41 51 | | | | | | 1 CLDESSSHSS SSSTCSSSGH NTYYQNTISV SPLQQQQQLQ RQQFNHQPLT ALSLNTNLVG 60 61 TSVPGGDAGC VSTSKNQQTC HSPTSSFNSS MSFDSGTYEG VPQQISTHLD RLDHLDNELH 120 121 THSQLQLKFE PYEHFQLDEE DCTPDDEEIL DYISLWQEQ |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.