| Protein: | shf-PA |
| Organism: | Drosophila melanogaster |
| Length: | 456 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for shf-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
385.0 | [0..35] | [455..322] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MTHQGIGCLV KWLYLVLIVH TLLCIGQLEC RQQHHNRNNN NNNRRADSSS SEEGHGNTSD 60
61 GLDNFADQDA SFVGHGHQPR RGQRKKQQGG GGGGSGGGGG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [101-162] |
1 11 21 31 41 51
| | | | | |
1 NGGGGGSRHN RNEESGISLW INEQQLKMLT ALYFPQGYSE RLYAIHNSRV TNDLRDTTLY 60
61 NF
|
| Detection Method: | |
| Confidence: | 15.0 |
| Match: | 2d3jA |
| Description: | No description for 2d3jA was found. |
|
Region A: Residues: [163-456] |
1 11 21 31 41 51
| | | | | |
1 LVIPSEVNYV NFTWKSGRRK YFYDFDRLQT MDESILKAPT LSIRKSGRIP QEQKNFSIFL 60
61 PCTGNSSGTA SFNVGLKIQT RHNKPLSGTP IRLNFKKECA HRGVYDIDAS NPTSLTTLQE 120
121 CSLKCGKNGY CNEHHICKCN VGYTGQYCET AFCFPQCLNG GNCTAPSVCT CPEGYQGTQC 180
181 EGGICKDKCL NGGKCIQKDK CQCSKGYYGL RCEYSKCVIP CKNEGRCIGN NLCRCPNGLR 240
241 GDHCEIGRKQ RSICKCRNGT CVSHKHCKCH PGFYGRHCNG RKRRHVHRND DSKF
|
| Detection Method: | |
| Confidence: | 11.39794 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor binding | 4.60755835611133 | bayes_pls_golite062009 |
| growth factor activity | 3.72526290796901 | bayes_pls_golite062009 |
| binding | 2.07793256968292 | bayes_pls_golite062009 |
| protein binding | 1.71989387545809 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 1.68731507829717 | bayes_pls_golite062009 |
| heparin binding | 1.47717701519646 | bayes_pls_golite062009 |
| epidermal growth factor receptor binding | 1.25957748598741 | bayes_pls_golite062009 |
| transcription factor binding | 0.697310246671849 | bayes_pls_golite062009 |
| ErbB-3 class receptor binding | 0.65339109098708 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.566933146071483 | bayes_pls_golite062009 |
| polysaccharide binding | 0.50776094968211 | bayes_pls_golite062009 |
| ErbB-2 class receptor binding | 0.470263535896705 | bayes_pls_golite062009 |
| transcription regulator activity | 0.396984935987962 | bayes_pls_golite062009 |
| pattern binding | 0.365394105720783 | bayes_pls_golite062009 |
| structural molecule activity | 0.076107837006494 | bayes_pls_golite062009 |
