YRC Public Data Repository - Protein Structure Prediction

Protein:	Atx-1-PB
Organism:	Drosophila melanogaster
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Atx-1-PB.

Description	E-value	Query Range	Subject Range
gi\|89040506, gi\|... - gi\|89040506\|ref\|XP_933557.1\| PREDICTED: similar to Ataxin-1 (Spinocerebellar ataxia type 1 protein h...	222.0	[0..21]	[178..430]
gi\|73957430 - gi\|73957430\|ref\|XP_546845.2\| PREDICTED: similar to spinocerebellar ataxia 1 homolog [Canis familiari...	220.0	[0..21]	[196..453]
gi\|114663539 - gi\|114663539\|ref\|XP_511093.2\| PREDICTED: hypothetical protein [Pan troglodytes]	220.0	[0..21]	[178..353]
gi\|76640846 - gi\|76640846\|ref\|XP_599282.2\| PREDICTED: similar to spinocerebellar ataxia 1 homolog [Bos taurus]	219.0	[0..6]	[196..3]
gi\|109508866, gi... - gi\|109508866\|ref\|XP_001077096.1\| PREDICTED: similar to spinocerebellar ataxia 1 homolog [Rattus norv...	218.0	[0..21]	[178..373]
gi\|109129138 - gi\|109129138\|ref\|XP_001098366.1\| PREDICTED: similar to Ataxin-1 (Spinocerebellar ataxia type 1 prote...	217.0	[0..21]	[178..455]
CE11722 - WBGene00019394 status:Partially_confirmed TR:O44771 protein_id:AAB96750.1	207.0	[0..31]	[166..1]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMHMELSYG RGYDPIGRQP PSLPPPSQQH WSSNGFSDDS ASCFRRGSYI ELASGAMRRV  60
   61 EDIRTEDFIQ SALRSQLFEL REATVVRIDW SGCPSLVTLT FSYDTHHAKM DLQVQPGHPM 120
  121 FVYGQGWASC DPQLSLQLYE LKCQQLQVGD ICLSLVPNEQ PAAPCPPQPA PPPPCPPPSL 180
  181 PPSMEMPVPM GSPPTGSYGF LPFKHPYEMY AQMASFVAVY TQHMMGKLNY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	1oa8A
Description:	AXH domain of human spinocerebellar ataxin-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.707059204953393	bayes_pls_golite062009
protein binding	0.079651215445451	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: