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View Structure Prediction Details

Protein: C901-PA
Organism: Drosophila melanogaster
Length: 559 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C901-PA.

Description E-value Query
Range
Subject
Range
TNXB - tenascin XB
347.0 [0..4] [546..197]

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Predicted Domain #1
Region A:
Residues: [1-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSDKKAALL LVTAITALKL EEMNAYRRNF DARQSSNSNI PLWKQRACEK SQKQRQNAHY  60
   61 VCDEKGDFKC LPGWQGDLCQ VPMCRRGCDP MNGYCQRPGE CRCRIGYSGE LCDKCIPLPG 120
  121 CQHGGCTKPF ECICKPGWAG LFCTEPSCRT GCHSTRGYCE APGECRCRIG YAGRTCSECA 180
  181 TMPGCQHGTC NKPLECLCLP GYTGLLCQTP ICDPDCSKQH GYCRKPGECR CKVGWTGSQC 240
  241 DKCFPYPGCA NGDCEAPWEC NCHPGWGGML CDEKLTYCVE HPDTCENGGK CTSLSREDGS 300
  301 YQCQCRQGFL GKNCEIRDDF LLTSEAPPRI TPPTPAELVL ELDGELDQNG QQDIGAGVPD 360
  361 DSEPGGGLVG EKLPAGNEPE RRKNDTVANV ATAGTGAGAG PMNSLPGNSN ATRTTLVVAT 420
  421 ETGSDNATNE ALSAVTTR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 1n7dA
Description: Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.286076792172079 bayes_pls_golite062009
protein binding 0.14494900666454 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [439-559]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RATPIPLTSG EKTVKGNATS VSVATGPQPR PPLPIVASQE QTIANLAPAG TVTVTATTAP  60
   61 TATTAATSVT SHKDKPNVAD EEEDEDDDDD EEDEDGEYDE EEDEDEDDEE DDSDQLIPNI 120
  121 I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.09691
Match: 1tozA
Description: NMR structure of the human NOTCH-1 ligand binding region
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle