| Protein: | FBpp0309304, FBp... |
| Organism: | Drosophila melanogaster |
| Length: | 1038 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309304, FBp....
| Description | E-value | Query Range |
Subject Range |
|
|
1016.0 | [0..1] | [1038..1] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MANKLRKSNA IEWATATGTV PLLERSCCHS EDAALEPQAS KTSHREQAPI LRHLSQLSHL 60
61 LIIAGLLIVC LAGVTEGRRH APLMFEESDT GR
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [93-177] |
1 11 21 31 41 51
| | | | | |
1 RSNRPAVTEC QFGKVLRELG STWYADLGPP FGVMYCIKCE CVAIPKKRRI VARVQCRNIK 60
61 NECPPAKCDD PISLPGKCCK TCPGD
|
| Detection Method: | |
| Confidence: | 2.22 |
| Match: | 1u5mA |
| Description: | Structure of a Chordin-like Cysteine-rich Repeat (VWC module) from Collagen IIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| extracellular matrix structural constituent | 4.15933718640855 | bayes_pls_golite062009 |
| platelet-derived growth factor binding | 3.82504499599732 | bayes_pls_golite062009 |
| growth factor binding | 3.07979418958893 | bayes_pls_golite062009 |
| protein binding | 2.13859012595807 | bayes_pls_golite062009 |
| binding | 1.72922707266313 | bayes_pls_golite062009 |
| SMAD binding | 1.58863880004415 | bayes_pls_golite062009 |
| receptor binding | 1.47786086313432 | bayes_pls_golite062009 |
| integrin binding | 1.24144638872639 | bayes_pls_golite062009 |
| extracellular matrix structural constituent conferring tensile strength | 0.493781546820044 | bayes_pls_golite062009 |
| protein complex binding | 0.438148656492799 | bayes_pls_golite062009 |
|
Region A: Residues: [178-279] |
1 11 21 31 41 51
| | | | | |
1 RNDTDVALDV PVPNEEEERN MKHYAALLTG RTSYFLKGEE MKSMYTTYNP QNVVATARFL 60
61 FHKKNLYYSF YTSSRIGRPR AIQFVDDAGV ILEEHQLETT LA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [280-482] |
1 11 21 31 41 51
| | | | | |
1 GTLSVYQNAT GKICGVWRRV PRDYKRILRD DRLHVVLLWG NKQQAELALA GKVAKYTALQ 60
61 TELFSSLLEA PLPDGKTDPQ LAGAGGTAIV STSSGAASSM HLTLVFNGVF GAEEYADAAL 120
121 SVKIELAERK EVIFDEIPRV RKPSAEINVL ELSSPISIQN LRLMSRGKLL LTVESKKYPH 180
181 LRIQGHIVTR ASCEIFQTLL APH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [483-637] |
1 11 21 31 41 51
| | | | | |
1 SAESSTKSSG LAWVYLNTDG SLAYNIETEH VNTRDRPNIS LIEEQGKRKA KLEDLTPSFN 60
61 FNQAIGSVEK LGPKVLESLY AGELGVNVAT EHETSLIRGR LVPRPVADAR DSAEPILLKR 120
121 QEHTDAQNPH AVGMAWMSID NECNLHYEVT LNGVP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [638-1038] |
1 11 21 31 41 51
| | | | | |
1 AQDLQLYLEE KPIEAIGAPV TRKLLEEFNG SYLEGFFLSM PSAELIKLEM SVCYLEVHSK 60
61 HSKQLLLRGK LKSTKVPGHC FPVYTDNNVP VPGDHNDNHL VNGETKCFHS GRFYNESEQW 120
121 RSAQDSCQMC ACLRGQSSCE VIKCPALKCK STEQLLQRDG ECCPSCVPKK EAADYSAQSS 180
181 PATNATDLLQ QRRGCRLGEQ FHPAGASWHP FLPPNGFDTC TTCSCDPLTL EIRCPRLVCP 240
241 PLQCSEKLAY RPDKKACCKI CPEGKQSSSN GHKTTPNNPN VLQDQAMQRS PSHSAEEVLA 300
301 NGGCKVVNKV YENGQEWHPI LMSHGEQKCI KCRCKDSKVN CDRKRCSRST CQQQTRVTSK 360
361 RRLFEKPDAA APAIDECCST QCRRSRRHHK RQPHHQQRSS S
|
| Detection Method: | |
| Confidence: | 17.221849 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor binding | 4.33045214660893 | bayes_pls_golite062009 |
| growth factor activity | 3.53240291240997 | bayes_pls_golite062009 |
| epidermal growth factor receptor binding | 3.23778562911102 | bayes_pls_golite062009 |
| protein binding | 3.02592228806142 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 2.86713236325679 | bayes_pls_golite062009 |
| ErbB-2 class receptor binding | 2.56367101923009 | bayes_pls_golite062009 |
| heparin binding | 2.49012176521764 | bayes_pls_golite062009 |
| binding | 2.33940742543305 | bayes_pls_golite062009 |
| ErbB-3 class receptor binding | 2.197145317433 | bayes_pls_golite062009 |
| pattern binding | 1.7855850180475 | bayes_pls_golite062009 |
| molecular transducer activity | 1.66401431847753 | bayes_pls_golite062009 |
| signal transducer activity | 1.66401431847753 | bayes_pls_golite062009 |
| polysaccharide binding | 1.52943230565474 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 0.87690248187077 | bayes_pls_golite062009 |
| transcription factor binding | 0.795087651578297 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 0.44857826904729 | bayes_pls_golite062009 |
| carbohydrate binding | 0.37481112933019 | bayes_pls_golite062009 |
| glycoprotein binding | 0.128291636237359 | bayes_pls_golite062009 |
