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View Structure Prediction Details

Protein: wgn-PA
Organism: Drosophila melanogaster
Length: 343 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wgn-PA.

Description E-value Query
Range
Subject
Range
gi|31321976 - gi|31321976|gb|AAM66764.1| VADER [Drosophila melanogaster]
540.0 [0..14] [343..1]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPPRLPGGH GGAMRSRSSS SGHHLNTTFH KRRRRRQQHH IGGSHISISH GSYLALLLLS  60
   61 TTCSLVATSA SSSSSAANTD IAPPD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPVSQVSIA SSSPCAPQHW WDSQRDRCTP CTRCQGEMIP LRPCQLHTDT ICGSIYDLKI  60
   61 DWVVLAKTEP NWKERRKSSE YEHFEHNAPL QHLTHEQLQQ LHEEAAAAWV LDWQTGVLYV 120
  121 AVLTCLVFFS VAACILIHHM RQWRRMERRL DQDVEELSTK LMAKLAEVQS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [256-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDGGTFFIGN ADALRGLPAS AATTHPATTQ SGIFQPQHVL LPEKRGKHQE RRILKTLQPG  60
   61 NVYIEESNAG LGGMGVGLGV RGCSGLKG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle