| Protein: | arc1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 377 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arc1.
| Description | E-value | Query Range |
Subject Range |
|
|
364.0 | [0..4] | [377..1165] |
|
|
352.0 | [0..2] | [377..1149] |
|
|
350.0 | [0..2] | [377..1077] |
|
|
347.0 | [0..3] | [376..917] |
|
|
347.0 | [0..2] | [376..812] |
|
|
345.0 | [0..4] | [376..641] |
|
Region A: Residues: [1-377] |
1 11 21 31 41 51
| | | | | |
1 MATSQVLHIL PKPSYEHAFN SQRTEFVTTT ATNQVELYEQ DGNGWKHART FSDHDKIVTC 60
61 VDWAPKSNRI VTCSQDRNAY VYEKRPDGTW KQTLVLLRLN RAATFVRWSP NEDKFAVGSG 120
121 ARVISVCYFE QENDWWVSKH LKRPLRSTIL SLDWHPNNVL LAAGCADRKA YVLSAYVRDV 180
181 DAKPEASVWG SRLPFNTVCA EYPSGGWVHA VGFSPSGNAL AYAGHDSSVT IAYPSAPEQP 240
241 PRALITVKLS QLPLRSLLWA NESAIVAAGY NYSPILLQGN ESGWAHTRDL DAGTSKTSFT 300
301 HTGNTGEGRE EEGPVSFTAL RSTFRNMDLK GSSQSISSLP TVHQNMIATL RPYAGTPGNI 360
361 TAFTSSGTDG RVVLWTL
|
| Detection Method: |  |
| Confidence: | 44.154902 |
| Match: | 1k8kC |
| Description: | Arp2/3 complex 41 kDa subunit ARPC1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 3.86142918698875 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| actin filament binding | 2.0735069176589 | bayes_pls_golite062009 |
| binding | 1.79788997337153 | bayes_pls_golite062009 |
| dynein binding | 1.69349714290074 | bayes_pls_golite062009 |
| protein binding | 1.11897341394404 | bayes_pls_golite062009 |
| myosin binding | 0.989691178611801 | bayes_pls_golite062009 |
| tubulin binding | 0.968047176592527 | bayes_pls_golite062009 |
| microtubule binding | 0.834073483714259 | bayes_pls_golite062009 |
| transporter activity | 0.692270256454453 | bayes_pls_golite062009 |
| 0.45054027253231 | bayes_pls_golite062009 | |
| myosin II binding | 0.33142771724387 | bayes_pls_golite062009 |
| myosin heavy chain kinase activity | 0.231534552000461 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.121183207943714 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
