YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC16E8.04c
Organism:	Schizosaccharomyces pombe
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC16E8.04c.

Description	E-value	Query Range	Subject Range
CHMU_ARATH - Chorismate mutase, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=2 SV=2	384.0	[0..3]	[250..75]
gi\|4809049 - gi\|4809049\|gb\|AAD30065.1\|AF133241_1 chorismate mutase [Emericella nidulans] gi\|40739075, gi\|... - gi\|67541392\|ref\|XP_664470.1\| hypothetical protein AN6866.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	378.0	[0..1]	[250..7]
gi\|85105491 - gi\|85105491\|ref\|XP_961975.1\| hypothetical protein NCU07725 [Neurospora crassa OR74A] gi\|32415906, gi\|... - gi\|32415906\|ref\|XP_328431.1\| hypothetical protein [Neurospora crassa], gi\|28923564\|gb\|EAA32739.1\| hy...	374.0	[0..1]	[250..7]
gi\|39952135, gi\|... - gi\|39952135\|ref\|XP_363784.1\| hypothetical protein MGG_01710 [Magnaporthe grisea 70-15], gb\|EAA56059....	374.0	[0..1]	[250..35]
gi\|119175954, gi... - gi\|90298912\|gb\|EAS28543.1\| hypothetical protein CIMG_09747 [Coccidioides immitis RS], gi\|119175954\|r...	370.0	[0..1]	[250..7]
gi\|47846873 - gi\|47846873\|dbj\|BAD21145.1\| chorismate mutase [Rosellinia sp. PF1022]	370.0	[0..1]	[250..7]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVNEKLKL ENIRSALIRQ EDTIIFNFLE RAQFPRNEKV YKSGKEGCLN LENYDGSFLN  60
   61 YLLHEEEKVY ALVRRYASPE EYPFTDNLPE PILPKFSGKF PLHPNNVNVN SEILEYYINE 120
  121 IVPKISSPGD DFDNYGSTVV CDIRCLQSLS RRIHYGKFVA EAKYLANPEK YKKLILARDI 180
  181 KGIENEIVDA AQEERVLKRL HYKALNYGRD AADPTKPSDR INADCVASIY KDYVIPMTKK 240
  241 VEVDYLLARL L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	99.0
Match:	2csmA
Description:	Allosteric chorismate mutase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chorismate mutase activity	3.78733095924257	bayes_pls_golite062009
catalytic activity	1.09506175640279	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: