YRC Public Data Repository - Protein Structure Prediction

Protein:	clc1
Organism:	Schizosaccharomyces pombe
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clc1.

Description	E-value	Query Range	Subject Range
gi\|2951785, gi\|1... - gi\|2951785\|dbj\|BAA25104.1\| clathrin light chain [Schizosaccharomyces pombe], gi\|11282549\|pir\|\|T43331...	218.0	[0..6]	[229..1]
gi\|73971344 - gi\|73971344\|ref\|XP_866787.1\| PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 3...	211.0	[0..6]	[213..3]
gi\|225494, gi\|510 - gi\|510\|emb\|CAA28542.1\| unnamed protein product [Bos taurus], gi\|225494\|prf\|\|1304303B clathrin LCa	207.0	[0..6]	[213..3]
CLCA_MOUSE - Clathrin light chain A OS=Mus musculus GN=Clta PE=1 SV=1	207.0	[0..6]	[213..3]
gi\|30585415, gi\|... - gi\|60653991\|gb\|AAX29688.1\| clathrin light polypeptide [synthetic construct], gi\|30585415\|gb\|AAP36980...	205.0	[0..13]	[213..20]

Back

Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFPALEDF DDGLVTAPVD DSKNNTDFLE REKLALGEDA GQFETPEDKD ALLNFENDSE  60
   61 AEQTRFEQNF PPIDAEMQAS GTFSAPKAPY MGQAEVHPPE D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.237	a.24.17	Group V grass pollen allergen

Predicted Domain #2

Region A:
Residues: [102-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESGDPEPVRK WKEDQMKRIQ ERDESSKKLR ESNIEKARKA IDDFYENFND KRDKVIAKSR  60
   61 KEQEKLLEEN ESKSTGTTSW ERILKLIDLS DKPEAHGRST ERFRELLISL AKDSNAPGAA 120
  121 GTTVSSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	1xi4J
Description:	Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits