YRC Public Data Repository - Protein Structure Prediction

Protein:	cut8
Organism:	Schizosaccharomyces pombe
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cut8.

Description	E-value	Query Range	Subject Range
STS1_YEAST - Tethering factor for nuclear proteasome STS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c... STS1_YEAS8 - Tethering factor for nuclear proteasome STS1 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Pri... STS1 - Protein that interacts with the karyopherin Srp1p; may have a role with Srp1p in ubiquitin-mediated ... STS1_YEAS1 - Tethering factor for nuclear proteasome STS1 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=STS1 PE...	314.0	[0..18]	[251..60]
gi\|38102890, gi\|... - gi\|39946628\|ref\|XP_362851.1\| hypothetical protein MG08586.4 [Magnaporthe grisea 70-15], gb\|EAA49671....	309.0	[0..10]	[210..4]
gi\|28922602, gi\|... - gi\|32406002\|ref\|XP_323614.1\| hypothetical protein ( (AL513462) related to Sts1 protein [Neurospora c... STS1_NEUCR - Tethering factor for nuclear proteasome sts1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / ...	309.0	[0..10]	[210..35]
STS1_EMENI - Tethering factor for nuclear proteasome sts1 OS=Emericella nidulans GN=sts1 PE=3 SV=1 STS1_EMENI - Tethering factor for nuclear proteasome sts1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / C...	302.0	[0..22]	[214..75]
gi\|88178354, gi\|... - gi\|88178354\|gb\|EAQ85822.1\| hypothetical protein CHGG_07075 [Chaetomium globosum CBS 148.51], gi\|1161...	299.0	[0..10]	[236..4]
gi\|46137283, gi\|... - gi\|46137283\|ref\|XP_390333.1\| hypothetical protein FG10157.1 [Gibberella zeae PH-1], gi\|42545151\|gb\|E...	292.0	[0..10]	[209..36]
STS1_ASPTN - Tethering factor for nuclear proteasome sts1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) G...	290.0	[0..22]	[214..73]
STS1_ASPFN - Tethering factor for nuclear proteasome sts1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 ... gi\|83769221 - gi\|83769221\|dbj\|BAE59358.1\| unnamed protein product [Aspergillus oryzae] STS1_ASPOR - Tethering factor for nuclear proteasome sts1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=s...	290.0	[0..1]	[212..26]
STS1_ASPFU - Tethering factor for nuclear proteasome sts1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /...	289.0	[0..1]	[212..25]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLSYSQIK KRKADFDEDI SKRARQLPVG EQLPLSRLLQ YSDKQQLFTI LLQCVEKHPD  60
   61 LARDIRGILP APSMDTCVET LRKLLINLND SFPYGGDKRG DYAFNRIREK YMAVLHALND 120
  121 MVPCYLPPYS TCFEKNITFL DAATNVVHEL PEFHNPNHNV YKSQAYYELT GAWLVVLRQL 180
  181 EDRPVVPLLP LEELEEHNKT SQNRMEEALN YLKQLQKNEP LVHERSHTFQ QTNPQNNFHR 240
  241 HTNSMNIGND NGMGWHSMHQ YI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	100.49485
Match:	PF08559.1
Description:	No description for PF08559.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits