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View Structure Prediction Details

Protein: gti1
Organism: Schizosaccharomyces pombe
Length: 720 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gti1.

Description E-value Query
Range
Subject
Range
PK1L3_MOUSE - Polycystic kidney disease protein 1-like 3 OS=Mus musculus GN=Pkd1l3 PE=1 SV=2
243.0 [0..86] [534..270]
gi|54657094 - gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu...
gi|67597591 - gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...
201.0 [0..73] [384..1560]
gi|149773456, gi... - gi|149773456|ref|NP_055853.1| hypothetical protein LOC643314 [Homo sapiens], gi|113412042|ref|XP_947...
189.0 [0..93] [498..915]
gi|42552307, gi|... - gi|46138563|ref|XP_390972.1| hypothetical protein FG10796.1 [Gibberella zeae PH-1], gi|42552307|gb|E...
188.0 [0..8] [412..1]
gi|49091500, gi|... - gi|67525233|ref|XP_660678.1| hypothetical protein AN3074.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
182.0 [0..8] [365..121]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEPGNLQPT FVGFIGTTVD ALLLFEACRQ NYTHFVDRRP QDRERERLIR SGSVFVFDEV  60
   61 QSGIKRWTDG IAWSPSRVIG NFLVYRQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LCKKNSVSDR KRSSKSRSDS DEEEVSAFTV SVPVDVDVAS HVNISSPSAP SLSDNLFPGS  60
   61 SFSASSQQNP SSPGSNDIKS EFAAVKNEYV L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [179-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPTSPTTSAA FPSSFSSLPL VSSKPTGTPF VPKSPPSSSP STTNVSNAST SSAPINPRAP  60
   61 QTRRESISST SSIHYCSSSS LSYLHDTERA LVGSLTDSYG FKKSGLIKKT ISLMID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [295-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRLHHLISYY TPEDVLNGKL QTPSSFNLFQ QLTISKDLLE YKSFRIPPLV EAAESEKISQ  60
   61 LSTLEKRTLP SFPYNPFFSS STAEIDPYHF QGLTLSTSPI SGVESSSLSS AISRNQSNLS 120
  121 SFQQQQQFSA LQSISNNALN ENIEQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [440-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPIKMAARHS YPNFLQTLPQ YMNDVYNPSG LAFNPVNPNA NNSFVNLNLI QFTSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [495-720]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQALFDYGEG PYVDQKSQYL QPKQPSSNTD SIDQSSYNMS LAASKQFLTS DTQPDVNENY  60
   61 SFISNSIPKN LSTSWNQNMG YHVTNSNSEL ASQNPLYAQQ AVSMESMGNA IQSSAYSAMS 120
  121 TPHGGHYDHY AATAKGKNPL AAENHASGGR LPKVPIPPLS NMRRGSVPII PSSASLPMRT 180
  181 SGNRFCHYSS LNGNHNRISA RTNPYPINNQ TMLFTEPLSK ERGSLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle