YRC Public Data Repository - Protein Structure Prediction

Protein:	mam2
Organism:	Schizosaccharomyces pombe
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mam2.

Description	E-value	Query Range	Subject Range
STE2 - Receptor for alpha-factor pheromone; seven transmembrane-domain GPCR that interacts with both pherom... STE2_YEAST - Pheromone alpha factor receptor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE2 PE=...	351.0	[0..22]	[344..24]
gi\|85093638 - gi\|85093638\|ref\|XP_959733.1\| hypothetical protein NCU05758 [Neurospora crassa OR74A] gi\|32410265, gi\|... - gi\|32410265\|ref\|XP_325613.1\| predicted protein [Neurospora crassa], gi\|28921184\|gb\|EAA30497.1\| hypot...	330.0	[0..13]	[300..34]
gi\|24940462 - gi\|24940462\|emb\|CAD56351.1\| alpha-pheromone receptor [Saccharomyces paradoxus]	326.0	[0..42]	[344..1]
gi\|83318576 - gi\|83318576\|emb\|CAC82978.2\| pheromone receptor [Sordaria macrospora]	313.0	[0..12]	[300..31]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQPWWKDFT IPDASAIIHQ NITIVSIVGE IEVPVSTIDA YERDRLLTGM TLSAQLALGV  60
   61 LTILMVCLLS SSEKRKHPVF VFNSASIVAM CLRAILNIVT ICSNSYSILV NYGFILNMVH 120
  121 MYVHVFNILI LLLAPVIIFT AEMSMMIQVR IICAHDRKTQ RIMTVISACL TVLVLAFWIT 180
  181 NMCQQIQYLL WLTPLSSKTI VGYSWPYFIA KILFAFSIIF HSGVFSYKLF RAILIRKKIG 240
  241 QFPFGPMQCI LVISCQCLIV PATFTIIDSF IHTYDGFSSM TQCLLIISLP LSSLWASSTA 300
  301 LKLQSMKTSS AQGETTEVSI RVDRTFDIKH TPSDDYSISD ESETKKWT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits