YRC Public Data Repository - Protein Structure Prediction

Protein:	orc2
Organism:	Schizosaccharomyces pombe
Length:	535 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for orc2.

Description	E-value	Query Range	Subject Range
gi\|148238191, gi... - gi\|54038187\|gb\|AAH84353.1\| Orc2-a protein [Xenopus laevis], gi\|148238191\|ref\|NP_001081070.1\| origin ...	570.0	[0..5]	[534..24]
gi\|67969346 - gi\|67969346\|dbj\|BAE01025.1\| unnamed protein product [Macaca fascicularis]	560.0	[0..6]	[534..25]
gi\|7650495 - gi\|7650495\|gb\|AAF66068.1\|AF254573_1 origin recognition complex subunit 2 [Cricetulus griseus]	559.0	[0..6]	[534..25]
ORC2L - origin recognition complex, subunit 2-like (yeast) gi\|123996215 - gi\|123996215\|gb\|ABM85709.1\| origin recognition complex, subunit 2-like (yeast) [synthetic construct]	559.0	[0..6]	[534..25]
gi\|114582759 - gi\|114582759\|ref\|XP_516023.2\| PREDICTED: origin recognition complex, subunit 2 [Pan troglodytes]	555.0	[0..13]	[534..101]
gi\|57110929 - gi\|57110929\|ref\|XP_536028.1\| PREDICTED: similar to origin recognition complex, subunit 2 [Canis fami...	545.0	[0..6]	[534..26]
gi\|171846289, gi... - gi\|171846289\|gb\|AAI61454.1\| Hypothetical protein MGC146410 [Xenopus tropicalis], gi\|118404360\|ref\|NP...	539.0	[0..5]	[534..24]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLINEHVRER YHFLRVSLTR VAHLVFANSH ESNDLKMVEN VSSTPKKGVL EDPSTLTPEV  60
   61 VTPRTPGHRI IKAKGAYTKD RSAKRRRGRI EIERHLLGEF DDNVGSNSLL DVPLYSLEAE 120
  121 PLSPSVMLED ESMEGINQSP QGISVEKLGK EDNRSRSSTP ASPSLESHEF SESREAGLSQ 180
  181 SNGFEARSHG TGFDEY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [197-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDKFSQRKTS SNTLSQLPVL DNQVYLDTVK EICTETEQHT QTLVHFQSRN FHQWYFELVN  60
   61 NFNLLFYGFG SKEHFLSSFV EKKLPCFPIF VVKGYFPQLQ LKNVLSSFLE FLEVTPAASV 120
  121 SDMLIQSLSI INS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [330-535]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSFSLGKIVF LVHNIDGESL IDERFQSALA AIASSKNVYF IASVDHVNFA LLWDTSLESS  60
   61 FNFVMHDATT FARYYNETTY ENSLGIGRAN VSNKEKAIKH VLYSLPANSR GIFKFLLIHQ 120
  121 LERMMDTQDF DARQGEKVGI EYRSFFQKCS AEFLCSNEPN FRSQLTEFFD HNIIESKRDV 180
  181 SNSEILWVPY PKNLLEILLE DMMEDV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits