YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC31A2.04c
Organism:	Schizosaccharomyces pombe
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC31A2.04c.

Description	E-value	Query Range	Subject Range
PSB5_CHICK - Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2	198.0	[0..2]	[193..56]
PSB8_CANLF - Proteasome subunit beta type-8 OS=Canis lupus familiaris GN=PSMB8 PE=1 SV=1	196.0	[0..2]	[192..73]
PSMA_METKA - Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1 PSA_METKA - Proteasome subunit alpha OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) ...	196.0	[0..2]	[192..37]
gi\|109070671 - gi\|109070671\|ref\|XP_001115562.1\| PREDICTED: similar to proteasome beta 8 subunit isoform E2 proprote...	194.0	[0..2]	[192..73]
gi\|160333293, gi... - ref\|XP_341315.1\| proteasome (prosome, macropain) subunit, beta type 5 [Rattus norvegicus], gi\|160333...	194.0	[0..2]	[193..60]
gi\|148229628, gi... - gi\|37589390\|gb\|AAH59335.1\| MGC69086 protein [Xenopus laevis], gi\|148229628\|ref\|NP_001080028.1\| low m...	193.0	[0..2]	[192..67]
PSB5_SPIOL - Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1	193.0	[0..2]	[193..56]
gi\|1405321 - gi\|1405321\|dbj\|BAA10931.1\| LMPX of hagfish [Myxine glutinosa]	193.0	[0..2]	[193..71]
gi\|15126628 - gi\|15126628\|gb\|AAH12246.1\| Proteasome (prosome, macropain) subunit, beta type 5 [Mus musculus]	193.0	[0..2]	[193..60]
PSA_PYRAB - Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=psmA PE=3 SV=1 PSMA_PYRAB - Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1	193.0	[0..3]	[193..38]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLLAVQGQ DFVLTASSSS AVRGITVLKP DDDKSQILNS HNLMLYCGEA GDTTNFAEYI  60
   61 AANISLYTLR HNLNLSPEAT ASFTRKQLAT SLRSRKPYQV NILLAGYETN LGKPELFWLD 120
  121 YLATCVRVPY ACQGYSSFYC LSIFDRYYKP DLTIDEAVRI MKLCFDELKK RMPIDFKGFI 180
  181 CKVVDKDGIR EINI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1fntY
Description:	CRYSTAL STRUCTURE OF THE 20S PROTEASOME FROM YEAST IN COMPLEX WITH THE PROTEASOME ACTIVATOR PA26 FROM TRYPANOSOME BRUCEI AT 3.2 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits