| Protein: | rpc2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1165 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpc2.
| Description | E-value | Query Range |
Subject Range |
|
|
1296.0 | [0..36] | [1162..45] |
|
|
1284.0 | [0..25] | [1161..2] |
|
|
1280.0 | [0..21] | [1161..1] |
|
|
1278.0 | [0..28] | [1159..32] |
|
|
1273.0 | [0..35] | [1161..2] |
|
|
1273.0 | [0..45] | [1161..29] |
|
|
1271.0 | [0..45] | [1159..20] |
|
|
1270.0 | [0..35] | [1161..2] |
|
Region A: Residues: [1-1165] |
1 11 21 31 41 51
| | | | | |
1 MGVNTAGDPQ KSQPKINKGG IGKDESFGAL FKPVYKGKKL ADPVPTIEDK WQLLPAFLKV 60
61 KGLVKQHLDS YNYFVDVDLK KIVQANEKVT SDVEPWFYLK YLDIRVGAPV RTDADAIQAS 120
121 ISPHECRLRD LTYGANIYVD IEYTRGKQVV RRRNVPIGRM PVMLRSNKCV LSGKNEMEMA 180
181 ALNECPLDPG GYFIVKGTEK VILVQEQLSK NRIIVEAEPK KGLWQASVTS STHERKSKTY 240
241 VITKNGKLYL KHNSVADDIP IVVVLKAMGL QSDQEIFELV AGAEASYQDL FAPSIEECAK 300
301 LNIYTAQQAL EYIGARVKVN RRAGANRLPP HEEALEVLAA VVLAHINVFN LEFRPKAVYI 360
361 GIMARRVLMA MVDPLQVDDR DYVGNKRLEL AGQLLALLFE DLFKKFNSDL KLNIDKVLKK 420
421 PHRTQEFDAY NQLTVHSDHI TQGMVRALST GNWSLKRFKM ERAGVTHVLS RLSYISALGM 480
481 MTRITSQFEK TRKVSGPRSL QASQFGMLCT SDTPEGEACG LVKNLALMTH ITTDEEEEPI 540
541 IKLAYAFGIE DIHVISGREL HSHGTYLVYL NGAILGISRY PSLFVASFRK LRRSGKISPF 600
601 IGIFINTHQR AVFISTDGGR ICRPLIIVQN GLPKVESKHI RLLKEGKWGF EDFLKQGLVE 660
661 YVDVNEENDS LISVYERDIT PDTTHLEIEP FTILGAVAGL IPYPHHNQSP RNTYQCAMGK 720
721 QAIGAIAYNQ LQRIDTLLYL MVYPQQPMVK TKTIELIGYD KLPAGQNATV AIMSYSGYDI 780
781 EDALVLNKSS IDRGFGRCQV FHKHSVIVRK YPNGTHDRIG DPQRDPETGE VVWKHGVVED 840
841 DGLAGVGCRV QPGQIYVNKQ TPTNALDNSI TLGHTQTVES GYKATPMTYK APEPGYIDKV 900
901 MLTTTDSDQT LIKVLMRQTR RPELGDKFSS RHGQKGVCGV IVQQEDMPFN DQGICPDIIM 960
961 NPHGFPSRMT VGKMIELLSG KVGVLRGTLE YGTCFGGTKV EDASRILVEH GYNYSGKDML1020
1021 TSGITGETLE AYIFMGPIYY QKLKHMVMDK MHARARGPRA VLTRQPTEGR SRDGGLRLGE1080
1081 MERDCLIAYG ASQLLLERLM ISSDACDVDV CGQCGLLGYK GWCNSCQSTR EVVKMTIPYA1140
1141 AKLLFQELLS MNIVPRLALE DEFKY
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1i3qB |
| Description: | RBP2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-directed RNA polymerase activity | 10.2021663255698 | bayes_pls_golite062009 |
| RNA polymerase activity | 10.2021663255698 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 7.6240729546188 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 6.31198922553685 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 5.44374972993429 | bayes_pls_golite062009 |
| transferase activity | 4.83218811360621 | bayes_pls_golite062009 |
| transcription regulator activity | 2.34884279395902 | bayes_pls_golite062009 |
| nucleic acid binding | 2.33174616086951 | bayes_pls_golite062009 |
| DNA binding | 2.27079409864244 | bayes_pls_golite062009 |
| binding | 1.73416306650822 | bayes_pls_golite062009 |
| RNA polymerase II transcription mediator activity | 1.53259746846673 | bayes_pls_golite062009 |
| catalytic activity | 1.36406839864424 | bayes_pls_golite062009 |
| RNA binding | 1.12618950637766 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.847783043631028 | bayes_pls_golite062009 |
| protein binding | 0.45174975126993 | bayes_pls_golite062009 |
