YRC Public Data Repository - Protein Structure Prediction

Protein:	rrg1
Organism:	Schizosaccharomyces pombe
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rrg1.

Description	E-value	Query Range	Subject Range
gi\|49086006, gi\|... - gi\|67517345\|ref\|XP_658549.1\| hypothetical protein AN0945.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	136.0	[0..3]	[287..261]
PRMA_DECAR - Ribosomal protein L11 methyltransferase OS=Dechloromonas aromatica (strain RCB) GN=prmA PE=3 SV=1	129.0	[0..2]	[282..31]
PRMA_NITEU - Ribosomal protein L11 methyltransferase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN... PRMA_NITEU - Ribosomal protein L11 methyltransferase OS=Nitrosomonas europaea GN=prmA PE=3 SV=1	126.0	[0..3]	[279..32]
gi\|254246385, gi... - gi\|84356764\|ref\|ZP_00981600.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia cenocepacia PC...	126.0	[0..2]	[282..31]
PRMA_BURCH - Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=prmA PE=3 SV=... PRMA_BURCA - Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=prmA PE=3 SV...	125.0	[0..2]	[282..31]
PRMA_BURS3 - Ribosomal protein L11 methyltransferase OS=Burkholderia sp. (strain 383) GN=prmA PE=3 SV=1 PRMA_BURL3 - Ribosomal protein L11 methyltransferase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB ...	125.0	[0..2]	[282..31]
gi\|67673328, gi\|... - gi\|99912774\|ref\|ZP_01319472.1\| hypothetical protein Bpse1_03001038 [Burkholderia pseudomallei 1655],...	124.0	[0..2]	[282..33]
gi\|85065650 - gi\|85065650\|ref\|ZP_01026503.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia mallei 10229] gi\|87314285, gi\|... - gi\|87314285\|ref\|ZP_01095336.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia mallei 2002721... gi\|83625658 - gi\|83625658\|ref\|ZP_00935888.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia mallei JHU] gi\|100917382, gi... - gi\|67637766\|ref\|ZP_00436704.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia mallei 10399],... gi\|83621125 - gi\|83621125\|ref\|ZP_00931537.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia mallei FMH] gi\|67643587 - gi\|67643587\|ref\|ZP_00442332.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia mallei GB8 hor... gi\|67649094 - gi\|67649094\|ref\|ZP_00447320.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia mallei NCTC 10... gi\|84523759 - gi\|84523759\|ref\|ZP_01010895.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia mallei SAVP1]	124.0	[0..2]	[282..33]
gi\|254190971, gi... - gi\|67755816\|ref\|ZP_00494706.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia pseudomallei P...	124.0	[0..2]	[282..33]
gi\|225931090, gi... - gi\|226196830\|ref\|ZP_03792409.1\| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei P... gi\|126227247, gi... - gi\|82531121\|ref\|ZP_00890343.1\| COG2264: Ribosomal protein L11 methylase [Burkholderia pseudomallei 1... gi\|242314839, gi... - gi\|90661843\|ref\|ZP_01249681.1\| hypothetical protein Bpse110_02006409 [Burkholderia pseudomallei 1106...	124.0	[0..2]	[282..33]

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Predicted Domain #1

Region A:
Residues: [1-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILEDTDLPL SHEQPSYSQI KDVLDKIPTG EHLWDLPKYE EKIILNWLIK LLATNLEWIT  60
   61 VEEERDYLVS TICERIAERS GRLAAPTRKR EFSLSNGVSV VLREPTMTYN TLGFKTWGSA 120
  121 PLLSANLPKW EDLSNSINAL ELGAGTGLVG ISAAIQLGWQ VVCTDLPDIV ENMQYNVDYN 180
  181 SELIQQYAGS VSCHVLDWMN PPDDDNRPSW LIKPFQRIIA SDCIYETHFG ELAIALFRKY 240
  241 LAKDGIVITE YPLRETHLEE IGVFEKGMDA AGFERQMGEE IGEEDFGSLY PVTCRWSRWK 300
  301 YHG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.39794
Match:	2pjdA
Description:	No description for 2pjdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits