| Protein: | srp2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 365 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srp2.
| Description | E-value | Query Range |
Subject Range |
|
|
158.0 | [0..1] | [301..222] |
|
|
155.0 | [0..2] | [302..230] |
|
|
155.0 | [0..4] | [297..218] |
|
|
155.0 | [0..4] | [265..219] |
|
|
155.0 | [0..4] | [279..191] |
|
|
154.0 | [0..5] | [268..192] |
|
|
153.0 | [0..4] | [275..191] |
|
|
153.0 | [0..4] | [268..82] |
|
Region A: Residues: [1-175] |
1 11 21 31 41 51
| | | | | |
1 MSETRLFVGR IPPQATREDM MDFFKGYGQI LDCKLMNGFG FVEVEDARDA RDIVNDFQGK 60
61 EFMGSRIVVE PARGERRRRE NFRESAASKY PRPRRTGFRL IVENLSEDVS WQDLKDVMRK 120
121 AGEPTFTDAH RENPGAGVVE FSTEEDMRNA LTSLNGEVIK GQAVTLREDP DAANE
|
| Detection Method: |  |
| Confidence: | 24.69897 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.43921816934576 | bayes_pls_golite062009 |
| binding | 3.19379300171257 | bayes_pls_golite062009 |
| mRNA binding | 3.1794312979994 | bayes_pls_golite062009 |
| nucleic acid binding | 2.34356093608328 | bayes_pls_golite062009 |
| protein binding | 1.52056358240529 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.851308060174055 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.414871108842203 | bayes_pls_golite062009 |
| poly-purine tract binding | 0.15653271757169 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.11509546367801 | bayes_pls_golite062009 |
| poly(A) RNA binding | 0.0459878286238641 | bayes_pls_golite062009 |
|
Region A: Residues: [176-365] |
1 11 21 31 41 51
| | | | | |
1 PLPEVPSRFR SRSPPARRRY RDDYRRGGDY RRDAYRPGRD DERRYAPRGE YRRNNRDEYR 60
61 RGGRDEYRRN SRSDYRRPHD DEYRRPRGDE YRPGRDEYRR SRDDGRPSHD DEYRRDAYSR 120
121 SPSPRRDREE NRSPAYEGSK SYSAAPEASM ESSAPTESYD KPAASEEQQP LQNHSDVGNG 180
181 SAEGQVAAEW
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
