YRC Public Data Repository - Protein Structure Prediction

Protein:	srp102
Organism:	Schizosaccharomyces pombe
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srp102.

Description	E-value	Query Range	Subject Range
gi\|169776633 - gi\|169776633\|ref\|XP_001822783.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771518 - gi\|83771518\|dbj\|BAE61650.1\| unnamed protein product [Aspergillus oryzae]	143.0	[0..34]	[227..22]
gi\|7438439, gi\|4... - pir\|\|T07609 GTP-binding protein SYPT - soybean, gi\|450635\|gb\|AAA50159.1\| GTP binding protein [Glyci...	136.0	[0..30]	[227..1]
ARA5_ARATH - Ras-related protein ARA-5 - Arabidopsis thaliana (Mouse-ear cress)	136.0	[0..19]	[227..45]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	134.0	[0..30]	[227..1]
gi\|157108598, gi... - gi\|157108598\|ref\|XP_001650303.1\| ras-related protein Rab-1A, putative [Aedes aegypti], gi\|108879268\|...	134.0	[0..26]	[227..2]
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	134.0	[0..30]	[227..1]
gi\|4586580 - gi\|4586580\|dbj\|BAA76422.1\| rab-type small GTP-binding protein [Cicer arietinum]	133.0	[0..30]	[227..1]
gi\|134111474, gi... - gi\|50258315\|gb\|EAL21006.1\| hypothetical protein CNBD6070 [Cryptococcus neoformans var. neoformans B-... gi\|57226596, gi\|... - gi\|58266414\|ref\|XP_570363.1\| GTPase [Cryptococcus neoformans var. neoformans JEC21], gi\|57226596\|gb\|...	133.0	[0..31]	[226..3]
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	133.0	[0..30]	[227..4]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGTSQAFKI IVATIIIGAI ISTLGIFFTR KTIQKKLPAV FLIGPSDSGK TSLFCELIYK  60
   61 EKKTTVPSIE PNEAVWKYGA WLVDLPGHPR AKRWITTKFS GNYNVKAVVF VLNSATIDRD 120
  121 VHEVGLMLFD TILKCRKHHV PHLLIACNKF DLFTAQPAEK IQQLLKAELH NILEEKNLQL 180
  181 ESIVSEDVDW ESVADQIEDT DLKFLPGSVA KMSNIEEWIS WMESALQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.09691
Match:	2fh5B
Description:	The Structure of the Mammalian SRP Receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
signal recognition particle binding	5.12760449152779	bayes_pls_golite062009
ribonucleoprotein binding	3.19511216911452	bayes_pls_golite062009
transporter activity	3.10463051760206	bayes_pls_golite062009
transmembrane transporter activity	2.95886887664984	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.95079405147356	bayes_pls_golite062009
pyrophosphatase activity	2.87427509025394	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.85499564954033	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.85178667290149	bayes_pls_golite062009
primary active transmembrane transporter activity	2.61775212528604	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.61467977505707	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.57552435627908	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.57107347424517	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.57054427875021	bayes_pls_golite062009
active transmembrane transporter activity	2.50494515048649	bayes_pls_golite062009
ATPase activity, coupled	2.43862163407966	bayes_pls_golite062009
ATPase activity	2.39535714892224	bayes_pls_golite062009
substrate-specific transporter activity	1.91091452720653	bayes_pls_golite062009
binding	1.76582493975071	bayes_pls_golite062009
protein transporter activity	1.71214667007262	bayes_pls_golite062009
hydrolase activity	1.57549510726226	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.56325751172863	bayes_pls_golite062009
ion transmembrane transporter activity	0.977237423302079	bayes_pls_golite062009
purine nucleotide binding	0.929901285538132	bayes_pls_golite062009
nucleotide binding	0.922442819194247	bayes_pls_golite062009
purine ribonucleotide binding	0.920987930180051	bayes_pls_golite062009
ribonucleotide binding	0.920926158369519	bayes_pls_golite062009
motor activity	0.87979065815418	bayes_pls_golite062009
guanyl nucleotide binding	0.640772201693186	bayes_pls_golite062009
guanyl ribonucleotide binding	0.63468044350616	bayes_pls_golite062009
GTP binding	0.621689261700018	bayes_pls_golite062009
protein binding	0.569246647740442	bayes_pls_golite062009
cation transmembrane transporter activity	0.557919489256916	bayes_pls_golite062009
catalytic activity	0.458437698837681	bayes_pls_golite062009
GTPase activity	0.437665353870877	bayes_pls_golite062009
ATP binding	0.41092997612902	bayes_pls_golite062009
adenyl ribonucleotide binding	0.385813421701492	bayes_pls_golite062009
adenyl nucleotide binding	0.377870145186619	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	0.213018989352421	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.123304946374679	bayes_pls_golite062009
ligand-gated channel activity	0.0767967479760561	bayes_pls_golite062009
ligand-gated ion channel activity	0.0767967479760561	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: