YRC Public Data Repository - Protein Structure Prediction

Protein:	atf31
Organism:	Schizosaccharomyces pombe
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atf31.

Description	E-value	Query Range	Subject Range
gi\|114581857 - gi\|114581857\|ref\|XP_001152057.1\| PREDICTED: chimerin (chimaerin) 1 isoform 6 [Pan troglodytes]	121.0	[0..26]	[203..254]
gi\|2801478, gi\|9... - gi\|9626985\|ref\|NP_056890.1\| gag polyprotein [Murine osteosarcoma virus], gi\|2801478\|gb\|AAC82572.1\| p... gi\|332196 - gi\|332196\|gb\|AAA46573.1\| gag-fos fusion protein [FBR murine osteosarcoma virus]	119.0	[0..7]	[199..307]
FOSX_MSVFR - Transforming protein v-Fos/v-Fox OS=FBR murine osteosarcoma virus GN=FOS-FOX PE=3 SV=1	118.0	[0..11]	[199..1]
FOS_CHICK - Proto-oncogene c-Fos OS=Gallus gallus GN=FOS PE=1 SV=1	115.0	[0..4]	[204..18]
FOS_RAT - Proto-oncogene c-Fos OS=Rattus norvegicus GN=Fos PE=1 SV=1 gi\|55934 - gi\|55934\|emb\|CAA29937.1\| unnamed protein product [Rattus rattus]	114.0	[0..10]	[209..24]
gi\|4581531, gi\|1... - gi\|4581531\|emb\|CAB40144.1\| c-Fos protein [Sus scrofa], gi\|178057282\|ref\|NP_001116585.1\| v-fos FBJ mu...	114.0	[0..10]	[209..24]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYETNTPTE ESIIPKHEDG EEYNSIYLSR FEKDISISQT LDFSQFMQTQ ILLTAKRKAL  60
   61 ELGDDRSPIN NDPYNIRRSD FDELSEYTAS KSPSIISEAS HNSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRELDDSGDE NTSKLTGTKQ SMLKARNRQA AQKCRIKKKK YLQTLQDQVN YYTSENKELL  60
   61 QSANDLREEI IKLRTLVFAH RDCPVSKACS KALFLMGKEK PLTPP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits