YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC13G6.05c
Organism:	Schizosaccharomyces pombe
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC13G6.05c.

Description	E-value	Query Range	Subject Range
gi\|40738648, gi\|... - gi\|67540656\|ref\|XP_664102.1\| hypothetical protein AN6498.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	243.0	[0..3]	[165..511]
gi\|73536260, gi\|... - gi\|73536261\|pdb\|2BJN\|B Chain B, X-Ray Structure Of Human Tpc6, gi\|73536260\|pdb\|2BJN\|A Chain A, X-Ray...	242.0	[0..9]	[165..5]
TRAPPC6B - trafficking protein particle complex 6B tr\|M3WUI2\|M3WUI2... - Trafficking protein particle complex 6B OS=Felis catus GN=TRAPPC6B PE=4 SV=1 ENSOCUP000000018... - pep:novel chromosome:oryCun2:17:58752192:58764624:-1 gene:ENSOCUG00000002171 transcript:ENSOCUT00000... ENSCJAT00000031745 - null gi\|57090101 - gi\|57090101\|ref\|XP_537419.1\| PREDICTED: similar to Trafficking protein particle complex subunit 6B [... gi\|109083419 - gi\|109083419\|ref\|XP_001092941.1\| PREDICTED: trafficking protein particle complex 6B [Macaca mulatta] gi\|114652760 - gi\|114652760\|ref\|XP_509918.2\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes] TPC6B_BOVIN - Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1 gi\|149692841 - gi\|149692841\|ref\|XP_001492624.1\| PREDICTED: similar to trafficking protein particle complex 6B isofo...	242.0	[0..9]	[165..3]
gi\|50748454 - gi\|50748454\|ref\|XP_421252.1\| PREDICTED: similar to Trafficking protein particle complex subunit 6B [...	239.0	[0..9]	[165..3]
gi\|149051293, gi... - gi\|27664540\|ref\|XP_216708.1\| PREDICTED: similar to Trafficking protein particle complex subunit 6B [...	238.0	[0..9]	[165..3]
TPC6B_MOUSE - Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=1 SV=1	238.0	[0..9]	[165..3]
gi\|159122340 - gi\|159122340\|gb\|EDP47461.1\| BET3 family protein [Aspergillus fumigatus A1163] gi\|66845182, gi\|... - gi\|70984068\|ref\|XP_747555.1\| BET3 family protein [Aspergillus fumigatus Af293], gi\|66845182\|gb\|EAL85...	235.0	[0..2]	[168..19]
gi\|83771645 - gi\|83771645\|dbj\|BAE61775.1\| unnamed protein product [Aspergillus oryzae] gi\|169776885 - gi\|169776885\|ref\|XP_001822908.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238493964, gi... - gi\|238493964\|ref\|XP_002378218.1\| BET3 family protein [Aspergillus flavus NRRL3357], gi\|220694868\|gb\|...	235.0	[0..3]	[164..16]
gi\|28279847, gi\|... - gi\|28279847\|gb\|AAH44077.1\| MGC52668 protein [Xenopus laevis], gi\|148222647\|ref\|NP_001079541.1\| hypot...	229.0	[0..9]	[166..3]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNVASLDF LLIELVHTAK RLAEDRKKKS SSEKSIESDF QMLESIGFQV GRKITERLLL  60
   61 NRNRITETTD VMRFLCRELW PIVFRKPLDN LKTNRRGIFV LTDTYFYWFT KMTAMTGTEM 120
  121 AQITTPYFYF PSGFIRGVVY TFGYSAQVIA QCPNLPTCIF HVKFSPNPTQ TSPGKPSTSE 180
  181 SSQTDTSTRP ANSQTPTTTR ASSYTTLVST SNQVSNEAEA SAVETSANQA QNTEDATENE 240
  241 DRLPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.154902
Match:	2cfhC
Description:	No description for 2cfhC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits