YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1D4.05c
Organism:	Schizosaccharomyces pombe
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1D4.05c.

Description	E-value	Query Range	Subject Range
gi\|91094253 - gi\|91094253\|ref\|XP_969008.1\| PREDICTED: similar to CG4554-PA [Tribolium castaneum]	328.0	[0..76]	[385..3951]
gi\|73960413 - gi\|73960413\|ref\|XP_858802.1\| PREDICTED: similar to xenotropic and polytropic retrovirus receptor iso...	327.0	[0..76]	[385..297]
XPR1_MUSSP - Xenotropic and polytropic retrovirus receptor 1 OS=Mus spretus GN=Xpr1 PE=1 SV=1	324.0	[0..76]	[385..299]
gi\|149058352, gi... - gi\|62659537\|ref\|XP_223117.3\| PREDICTED: similar to xenotropic and polytropic retrovirus receptor 1 [...	323.0	[0..76]	[385..299]
gi\|58381346, gi\|... - gi\|58381346\|ref\|XP_311179.2\| AGAP000653-PA [Anopheles gambiae str. PEST], gi\|55242987\|gb\|EAA06862.2\|...	322.0	[0..76]	[385..288]
XPR1_MUSTR - Xenotropic and polytropic retrovirus receptor 1 OS=Mus terricolor GN=Xpr1 PE=1 SV=1 XPR1_MUSDU - Xenotropic and polytropic retrovirus receptor 1 OS=Mus dunni GN=Xpr1 PE=1 SV=1	322.0	[0..76]	[385..299]
HGNC:12827\|MIM:6... - and polytropic retrovirus receptor 1 XPR1 - xenotropic and polytropic retrovirus receptor 1 gi\|114568242 - gi\|114568242\|ref\|XP_524986.2\| PREDICTED: xenotropic and polytropic retrovirus receptor [Pan troglody...	322.0	[0..76]	[385..299]
gi\|109019166 - gi\|109019166\|ref\|XP_001115004.1\| PREDICTED: similar to xenotropic and polytropic retrovirus receptor...	321.0	[0..76]	[385..299]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEVVEFPL HHKLALPFRI GLLVIVGTWL WSVCYHLIYI LNRYQPISPN PRGSLNSKWY  60
   61 HLLQIPLSNR HTDLEENTEF KANLVSPVDF HAGYCFAAIL SISWATGFIL FLKKTQGDIG 120
  121 GLYSHPIYPL LWVITAFILI VFPFPWRYRS SQRGLRKSII RVFLFFQADF RSPYKDFIVS 180
  181 EIFTSYAKAL GDFYIFGCVL QGHISKFTLR PDL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [214-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KCDGTFFVPL AMAYPFIVAI LQCLHYGLSR RKHTFKINLL SALKHATALP VIYLSAIIHA  60
   61 KQTKFTLTSG HGYLFWLWIL SALLSSAYTF LWDVFIDWRI RFPFHKSINH KRFPMFIYAI 120
  121 GCFINFILRV TWSMKLHPRL HQFHEYEMGI FSFEMLEILR RFLWLFFHLD AISS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.69897
Match:	PF03124.5
Description:	No description for PF03124.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits