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View Structure Prediction Details

Protein: SPAC6C3.09
Organism: Schizosaccharomyces pombe
Length: 335 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC6C3.09.

Description E-value Query
Range
Subject
Range
gi|114605310 - gi|114605310|ref|XP_527222.2| PREDICTED: ribonuclease P 40kDa subunit isoform 3 [Pan troglodytes]
408.0 [0..14] [320..24]
gi|55743132 - ref|NP_006629.2| ribonuclease P 40kDa subunit [Homo sapiens]
RPP40 - ribonuclease P/MRP 40kDa subunit
405.0 [0..16] [320..26]
gi|109069502 - gi|109069502|ref|XP_001095772.1| PREDICTED: similar to ribonuclease P 40kDa subunit isoform 3 [Macac...
399.0 [0..16] [320..26]
gi|74004013 - gi|74004013|ref|XP_535875.2| PREDICTED: similar to ribonuclease P 40kDa subunit [Canis familiaris]
382.0 [0..14] [320..24]
RPP40_RAT - Ribonuclease P protein subunit p40 OS=Rattus norvegicus GN=Rpp40 PE=2 SV=1
367.0 [0..53] [320..1]
RPP40_MOUSE - Ribonuclease P protein subunit p40 OS=Mus musculus GN=Rpp40 PE=2 SV=1
364.0 [0..53] [320..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCAFTKELK DEIYQKNYTE HEILQNAYNG KLDILLPVED ASEEAIRSIT KIVQDLSFYE  60
   61 FSGSPALLLH PDLYSTFIHT GIATIVSSSD NDNKICISQG ILSVTLDKDS YLVSGIDAKP 120
  121 SSSEPKDTLW VANIDLKSAF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.371 0.614 ribonuclease P activity c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.321 0.103 ribonuclease P activity a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.318 0.017 ribonuclease P activity d.185.1 LuxS/MPP-like metallohydrolase
View Download 0.353 0.016 ribonuclease P activity d.89.1 Origin of replication-binding domain, RBD-like
View Download 0.395 N/A N/A d.58.26 GHMP Kinase, C-terminal domain

Predicted Domain #2
Region A:
Residues: [141-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRPQWKGFER LKAALGRLPG KWSFYLTFPT EKVDQSYQNN LSHSLPVPMI SREINLKKGK  60
   61 LDQAKIPPPL VSTLNRNELF PSNGPLEVLE ILSFLRCNAK CVQNSFVPDP YISRYKPSCA 120
  121 VTDVLYLSIK GLFSSSTCLE LYELIRNISW NFIGVESFNS FRDVDNSSQL HSGDSSLLSF 180
  181 YDSRTERIRW TWRLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle