YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC5D6.07c
Organism:	Schizosaccharomyces pombe
Length:	495 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC5D6.07c.

Description	E-value	Query Range	Subject Range
gi\|1749590, gi\|1... - gi\|1749590\|dbj\|BAA13853.1\| unnamed protein product [Schizosaccharomyces pombe], pir\|\|T42750 hypothet...	562.0	[0..175]	[495..1]
gi\|46134287, gi\|... - gi\|46134287\|ref\|XP_389459.1\| hypothetical protein FG09283.1 [Gibberella zeae PH-1], gi\|42554081\|gb\|E...	262.0	[0..3]	[234..387]
gi\|38102498, gi\|... - gi\|39973727\|ref\|XP_368254.1\| hypothetical protein MGG_00990 [Magnaporthe grisea 70-15], gb\|EAA49332....	255.0	[0..3]	[234..106]
gi\|11359651 - gi\|11359651\|pir\|\|T49735 related to MDM1 protein [imported] - Neurospora crassa	253.0	[0..3]	[234..106]
gi\|32405286, gi\|... - gi\|40882341\|emb\|CAF06163.1\| related to intermediate filament protein MDM1 [Neurospora crassa], gi\|32... gi\|85085809 - gi\|85085809\|ref\|XP_957576.1\| hypothetical protein [Neurospora crassa OR74A]	252.0	[0..3]	[234..104]
gi\|49087048, gi\|... - gi\|67521840\|ref\|XP_658981.1\| hypothetical protein AN1377.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	249.0	[0..4]	[234..104]
gi\|159131027 - gi\|159131027\|gb\|EDP56140.1\| intermediate filament protein (Mdm1), putative [Aspergillus fumigatus A1... gi\|66849906, gi\|... - gi\|70995010\|ref\|XP_752271.1\| intermediate filament protein (Mdm1) [Aspergillus fumigatus Af293], gi\|...	238.0	[0..4]	[234..162]
gi\|88177647, gi\|... - gi\|88177647\|gb\|EAQ85115.1\| hypothetical protein CHGG_09129 [Chaetomium globosum CBS 148.51], gi\|1162...	236.0	[0..3]	[234..104]
gi\|83766381 - gi\|83766381\|dbj\|BAE56524.1\| unnamed protein product [Aspergillus oryzae] gi\|169768110 - gi\|169768110\|ref\|XP_001818526.1\| hypothetical protein [Aspergillus oryzae RIB40]	233.0	[0..4]	[234..104]
gi\|114188961, gi... - gi\|115402077\|ref\|XP_001217115.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	232.0	[0..4]	[234..103]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLSSLLNP IISKILEIYV YSWYSGISKD ALFPSQCEQV GGSIVHELEK RLSRQDAMDL  60
   61 LFYEIPFLLI KHIENTEEAK LRFALPQGQI LEIDTIYHSL HPHIALEKEE NELVYCRLLV 120
  121 EDILKYLLPA TNSKSEIECV ILREALAVQI HKSIQVASSP ETMYKFIIYL SKAI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	93.119186
Match:	PF02194.6
Description:	No description for PF02194.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-410]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQPSRRPWKE SITTAVRWVW HAFRILLITR GVPYFSTAWF QFYLKLFSQK DNVSSSDLTR  60
   61 WFFFYTLLYP WIALVSAFVA ETMTLCCIVT IFYDKNVNRQ WKQYILTSVS NMDKGNPSGG 120
  121 SQSTNVTTFR RFSQSSYPRR SNYRRRISTS SKSLYELSPS KFKSIPITSN PPPMLNLSKG 180
  181 STSVEPTFCE TNASVALSTV TSTPVFSTDS SPLSSRTREN LLSLIPSAVS SPTKAN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [411-495]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNKSHQRSFS IPKATKDSQT PSENSAATLK QAAIDAYSQI PVIPFFLPSD KLIMLVESEY  60
   61 RNKHIFYSLL NSFTMVMFPE LRHTK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.896	d.74.1	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
View	Download	0.786	d.74.1	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
View	Download	0.661	d.43.1	Elongation factor Ts (EF-Ts), dimerisation domain
View	Download	0.661	d.43.1	Elongation factor Ts (EF-Ts), dimerisation domain
View	Download	0.658	d.74.1	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
View	Download	0.648	a.188.1	Description not found.
View	Download	0.548	d.74.1	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
View	Download	0.517	d.74.1	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits