YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1039.01
Organism:	Schizosaccharomyces pombe
Length:	567 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1039.01.

Description	E-value	Query Range	Subject Range
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	280.0	[0..28]	[562..45]
gi\|44984758 - gi\|44984758\|gb\|AAS53601.1\| AFR230Cp [Ashbya gossypii ATCC 10895] gi\|44984758, gi\|... - gi\|45198748\|ref\|NP_985777.1\| AFR230Cp [Ashbya gossypii ATCC 10895], gi\|44984758\|gb\|AAS53601.1\| AFR23...	277.0	[0..44]	[562..66]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	277.0	[0..57]	[564..138]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	275.0	[0..6]	[564..93]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	272.0	[0..39]	[562..67]
gi\|42547995, gi\|... - gi\|46115914\|ref\|XP_383975.1\| hypothetical protein FG03799.1 [Gibberella zeae PH-1], gi\|42547995\|gb\|E...	272.0	[0..33]	[564..87]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	271.0	[0..22]	[563..5]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIMEKTDV SSSKHSFTFE PSSDEVGKAA EIVDTHENFY DDQGDIDNPE ELAELGYKQE  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.997
Match:	4hb1A
Description:	A DESIGNED FOUR HELIX BUNDLE PROTEIN.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [61-567]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRRQLSLFGI FSISFSVLGM LPSVASTLVF GLWYVGYPGL LWAWLIAMFF LICVSMSMAE  60
   61 ICSAMPTSGG LYYAAAVFAP KGWGPLASWI TGWSNYIGNI IGQPSVNSSA ASMILGAVTV 120
  121 NRPDFVIQRW QWFLLAVAIQ CFNCVLACLP TRIISRINGV ATYLNTAFLF IAGITILAYG 180
  181 GKNHNFVKGT KIWGDYINTT QWPTGFAILL SFNSPIWTMS GYDAPFHLSE ECSNASVNAP 240
  241 KAIVMTAVIG GVVGWIMQII VAYTLTDIDS VMNTSGSMWT AYLVQAMPPK AALGILSLTI 300
  301 ISAIIMGQSA LIASSRIAYS YARDGILPFS GWIGTVNPYT QTPVNAVICN CIISILILFL 360
  361 TFAGTVTLDA VFSVGAVAAF IAFTVPIAIR VFFTKDADFR RGPWNLGKFS RPIGLLAVSF 420
  421 VALMIPILCF PSVKNPTAQE MNWTCLVYGG PMLFTLVWYA ISARKWFKGP KASAHYKRPG 480
  481 EESSDIVEGV QADIPSSSDQ LKIKGDL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.32
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits