YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16G5.17
Organism:	Schizosaccharomyces pombe
Length:	560 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16G5.17.

Description	E-value	Query Range	Subject Range
YAS8_SCHPO - Uncharacterized transcriptional regulatory protein C3H8.08c OS=Schizosaccharomyces pombe (strain 972... SPAC3H8.08c - transcription factor	356.0	[0..1]	[559..1]
gi\|49085238, gi\|... - gi\|67516675\|ref\|XP_658223.1\| hypothetical protein AN0619.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	206.0	[0..21]	[540..6]
gi\|68475029, gi\|... - gi\|68475566\|ref\|XP_718131.1\| hypothetical protein CaO19.3308 [Candida albicans SC5314], gi\|68475029\|... orf19.3308, orf1... - STB5 CGDID:CAL0004052 Assembly 19, Contig19-10173 (43050, 44972) CDS, translated using codon table 1...	199.0	[0..16]	[509..37]
gi\|50549381, gi\|... - gi\|50549381\|ref\|XP_502161.1\| YALI0C22990p [Yarrowia lipolytica], gi\|49648028\|emb\|CAG82481.1\| unnamed... gi\|49648028 - gi\|49648028\|emb\|CAG82481.1\| YALI0C22990p [Yarrowia lipolytica]	197.0	[0..4]	[552..21]
STB5 - Transcription factor, involved in regulating multidrug resistance and oxidative stress response; for... STB5_YEAST - Protein STB5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STB5 PE=1 SV=1	174.0	[0..152]	[509..305]
gi\|49640536, gi\|... - gi\|50302935\|ref\|XP_451405.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640536\|emb\|CAH0299... gi\|49640536 - gi\|49640536\|emb\|CAH02993.1\| KLLA0A09251p [Kluyveromyces lactis]	171.0	[0..95]	[510..206]
gi\|169776814 - gi\|169776814\|ref\|XP_001822873.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771609 - gi\|83771609\|dbj\|BAE61740.1\| unnamed protein product [Aspergillus oryzae]	169.0	[0..4]	[476..5]
gi\|50409605, gi\|... - gi\|50409605\|ref\|XP_456889.1\| hypothetical protein DEHA0A13321g [Debaryomyces hansenii CBS767], gi\|49...	169.0	[0..9]	[477..35]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGKSKNRAH KNIRARSCLR CRRRKVKCDR QYPCSRCKES EESCTYGVNE QAVQLLEEPL  60
   61 SRPITRETDS SAHQETRTRL EENNLPKTQK FGFVDWKTIL KSSAEFQGIV QRDPESRLRE 120
  121 ALET

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.48
Match:	1pyiA
Description:	PPR1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	4.34861813464065	bayes_pls_golite062009
DNA binding	4.03985756894684	bayes_pls_golite062009
nucleic acid binding	3.97978190843512	bayes_pls_golite062009
transcription factor activity	2.87348461329489	bayes_pls_golite062009
binding	2.82809978070212	bayes_pls_golite062009
RNA polymerase II transcription factor activity	1.80191339934741	bayes_pls_golite062009
sequence-specific DNA binding	1.67344049333457	bayes_pls_golite062009
specific RNA polymerase II transcription factor activity	1.50774349911815	bayes_pls_golite062009
transcription activator activity	0.822069987038721	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [125-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPKLKKRLEC ILETIPPWDV CESLLKVYAN TFNVTNYILD FEQADKLLSD LKNSNHVFAT  60
   61 SIILIVTAIA VALSLES

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [202-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPSNIERYFS AVNHSAIELS DALNSKIDDF LNEEVIFRLW RNIDRIRLHA IRAQLCMRNQ  60
   61 FRSMNTDLCY AIHYACFVNP IFQNTDTEYE ANMEVWLSIC EIDALECVLR SCQPWVQHDI 120
  121 YGKLLSQRKM GSDVISYEFH SLLGQLLTCG LEIYKAIHTS TVNEFVNSIQ FYES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [376-560]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLSLVLMEIE SKFSNIDGSD IHFRYLFLKT VFWTVRKNLY QGFITVSRTL VPNYPDIVQK  60
   61 LGQTSIQLSR LISNSMDCFE KYGWLKAMLI LVTHTFLIIH VCSERGYDVP KDFWNVTASV 120
  121 QATLEEKKYP GIVWERIHYV LNIYTTINSV EPELSEDHGD LDDQNLFQVF TDIFDFNFNF 180
  181 PLPNL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: