YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21D10.10
Organism:	Schizosaccharomyces pombe
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21D10.10.

Description	E-value	Query Range	Subject Range
gi\|28516430, gi\|... - gi\|94376478\|ref\|XP_985227.1\| PREDICTED: similar to p300/CBP-associated factor [Mus musculus], gi\|285...	178.0	[0..37]	[285..586]
gi\|47218844 - gi\|47218844\|emb\|CAG02829.1\| unnamed protein product [Tetraodon nigroviridis]	178.0	[0..37]	[285..585]
gi\|50733046 - gi\|50733046\|ref\|XP_426001.1\| PREDICTED: similar to PCAF [Gallus gallus]	174.0	[0..37]	[285..716]
gi\|73965807 - gi\|73965807\|ref\|XP_849978.1\| PREDICTED: similar to GCN5 general control of amino-acid synthesis 5-li...	172.0	[0..37]	[288..594]
gi\|83764659 - gi\|83764659\|dbj\|BAE54803.1\| unnamed protein product [Aspergillus oryzae] gi\|169764667 - gi\|169764667\|ref\|XP_001816805.1\| hypothetical protein [Aspergillus oryzae RIB40]	171.0	[0..29]	[295..125]
gi\|66849200, gi\|... - gi\|70993438\|ref\|XP_751566.1\| histone acetyltransferase (Gcn5) [Aspergillus fumigatus Af293], gi\|6684... gi\|159125504 - gi\|159125504\|gb\|EDP50621.1\| histone acetyltransferase (Gcn5), putative [Aspergillus fumigatus A1163]	170.0	[0..29]	[297..125]
gi\|17017400, gi\|... - gi\|223949013\|gb\|ACN28590.1\| unknown [Zea mays], gi\|18447805\|emb\|CAD22097.1\| histone acetyltransferas...	170.0	[0..37]	[298..256]
gi\|38099365, gi\|... - gi\|39965407\|ref\|XP_365098.1\| hypothetical protein MG09943.4 [Magnaporthe grisea 70-15], gb\|EAA46722....	169.0	[0..29]	[293..31]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIAQEVAVL QYLDIQQENP NAPNEELFNR TAESSLLLEP IEQDQLKDLV EEWMHDSNKS  60
   61 DSKLLSNQVS QNDNDARKNL RKRLRNDVLK DLAEEIQGCE KKLESLYEEV AKA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAKAVEDQLA LEEADKEAKK AKTEAPVEAA NKSLRSRKKT PEIAAPANIE PEVAPTTKTP  60
   61 KKRAALSNEE KQSLKKFQSA MLPMLDNISN HRFGAPFSHP VNRKEAPDYD SLVYKPQDLR 120
  121 TLKNMIKEGN ITEVDELYRE VLRIFANCKM YNGSDPANAM SIWGDECFRY TEELFDIYRQ 180
  181 ASTRSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.39794
Match:	2f6jA
Description:	No description for 2f6jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits