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View Structure Prediction Details

Protein: SPAP27G11.07c
Organism: Schizosaccharomyces pombe
Length: 238 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAP27G11.07c.

Description E-value Query
Range
Subject
Range
gi|733123 - gi|733123|gb|AAA97437.1| serine/threonine kinase
226.0 [0..1] [236..152]
gi|157765372 - gi|157765372|ref|XP_001675029.1| Hypothetical protein CBG04756 [Caenorhabditis briggsae AF16]
PAR1_CAEBR - Serine/threonine-protein kinase par-1 OS=Caenorhabditis briggsae GN=par-1 PE=3 SV=1
226.0 [0..1] [236..110]
gi|47223289 - gi|47223289|emb|CAF98673.1| unnamed protein product [Tetraodon nigroviridis]
224.0 [0..6] [236..84]
gi|57639487 - gi|57639487|gb|AAW55621.1| putative serine/threonine kinase [Haemonchus contortus]
224.0 [0..19] [236..123]

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Predicted Domain #1
Region A:
Residues: [1-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKPDLRQR CSDIYREIKE KKLTVVKQGA EAITIKTEFY PGEVCLLKCR PAKRWRHPIL  60
   61 DQKLSRKRCL VEARLLAKCH YVGIKCPMLY FIDANRGQIY MEWIDGPCVR DYIREICECE 120
  121 IEKKLIPLMK RIGSEVAKMH KNDIVHGDLT TSNMMLESHN NPVPIFIDFG LGSVSESEED 180
  181 KAVDIYVLER ALSSTLPESE SLFHHVLDSY AQSWKQSKAT LRRFEEVRMR GRKRTMIG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.154902
Match: 1zmuA
Description: Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle