YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC577.04
Organism:	Schizosaccharomyces pombe
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC577.04.

Description	E-value	Query Range	Subject Range
gi\|109093776 - gi\|109093776\|ref\|XP_001106294.1\| PREDICTED: similar to THO complex 5 [Macaca mulatta]	255.0	[0..12]	[197..58]
gi\|114685757 - gi\|114685757\|ref\|XP_001135466.1\| PREDICTED: THO complex 5 isoform 3 [Pan troglodytes]	254.0	[0..12]	[197..37]
gi\|40789009 - gi\|40789009\|dbj\|BAA76827.2\| KIAA0983 protein [Homo sapiens]	253.0	[0..12]	[197..62]
THOC5_XENTR - THO complex subunit 5 homolog OS=Xenopus tropicalis GN=thoc5 PE=2 SV=1	253.0	[0..11]	[197..52]
gi\|73994939 - gi\|73994939\|ref\|XP_865372.1\| PREDICTED: similar to Protein C22orf19 (NF2/meningioma region protein p...	253.0	[0..12]	[197..58]
gi\|76639371 - gi\|76639371\|ref\|XP_882203.1\| PREDICTED: similar to Protein C22orf19 (NF2/meningioma region protein p...	252.0	[0..12]	[197..58]
gi\|61369168 - gi\|61369168\|gb\|AAX43295.1\| chromosome 22 open reading frame 19 [synthetic construct]	252.0	[0..12]	[197..58]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTENAISDCL NVLDSTRTLC LRIHELKQHS RDADDQNPEQ IKRQLMSKLL ILREANRKSY  60
   61 EQLVQAKTIT AEHKSELDNA RIRLQALQYK KLHLKTIIKN YEEKEHIYTA LPLVSKEEFL 120
  121 KEHPEFKSSN DHDLMLAILE DELKERQRLS TLKQELLKRK AALISENKAK RNALQKGDEK 180
  181 LQTFLRSSVP VQEYYNITSM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.7
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits