YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC2A9.06c
Organism:	Schizosaccharomyces pombe
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC2A9.06c.

Description	E-value	Query Range	Subject Range
gi\|46133196 - gi\|46133196\|ref\|ZP_00156785.2\| COG0020: Undecaprenyl pyrophosphate synthase [Haemophilus influenzae ... gi\|145638259, gi... - gi\|145638259\|ref\|ZP_01793869.1\| hypothetical protein CGSHiII_05794 [Haemophilus influenzae PittII], ...	255.0	[0..53]	[257..3]
gi\|52425982, gi\|... - gi\|52425982\|ref\|YP_089119.1\| UppS protein [Mannheimia succiniciproducens MBEL55E], gi\|52308034\|gb\|AA...	255.0	[0..53]	[257..3]
UPPS_THETN - Undecaprenyl pyrophosphate synthase OS=Thermoanaerobacter tengcongensis GN=uppS PE=3 SV=1 gi\|223488732, gi... - gi\|254479462\|ref\|ZP_05092789.1\| undecaprenyl pyrophosphate synthetase 1 [Carboxydibrachium pacificum... ISPT_CALS4 - Isoprenyl transferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM ...	254.0	[0..45]	[257..6]
UPPS_STRA5 - Undecaprenyl pyrophosphate synthase OS=Streptococcus agalactiae serotype V GN=uppS PE=3 SV=1 ISPT_STRA5 - Isoprenyl transferase OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN=upp...	253.0	[0..47]	[257..5]
gi\|42630246 - gi\|42630246\|ref\|ZP_00155790.1\| COG0020: Undecaprenyl pyrophosphate synthase [Haemophilus influenzae ... UPPS_HAEIN - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) OS=Haemoph... gi\|229813019, gi... - gi\|229844025\|ref\|ZP_04464166.1\| hypothetical protein CGSHi6P18H1_06296 [Haemophilus influenzae 6P18H... gi\|229810975, gi... - gi\|229845971\|ref\|ZP_04466083.1\| hypothetical protein CGSHi7P49H1_03953 [Haemophilus influenzae 7P49H... gi\|145273366, gi... - gi\|145641887\|ref\|ZP_01797461.1\| hypothetical protein CGSHiR3021_11219 [Haemophilus influenzae R3021]... UPPS_HAEIN - Undecaprenyl pyrophosphate synthase OS=Haemophilus influenzae GN=uppS PE=3 SV=1 gi\|148826436, gi... - gi\|148826436\|ref\|YP_001291189.1\| hypothetical protein CGSHiEE_07415 [Haemophilus influenzae PittEE],... gi\|145641887 - gi\|145641887\|ref\|ZP_01797461.1\| hypothetical protein CGSHiR3021_11219 [Haemophilus influenzae R3021] gi\|145634088, gi... - gi\|145634088\|ref\|ZP_01789799.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Haemophi... gi\|144987205, gi... - gi\|145632298\|ref\|ZP_01788033.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Haemophi...	253.0	[0..53]	[257..3]
ISPT_STRA3 - Isoprenyl transferase OS=Streptococcus agalactiae serotype III (strain NEM316) GN=uppS PE=3 SV=1 UPPS_STRA3 - Undecaprenyl pyrophosphate synthase OS=Streptococcus agalactiae serotype III GN=uppS PE=3 SV=1	253.0	[0..47]	[257..5]
gi\|25314098 - pir\|\|AI2234 undecaprenyl pyrophosphate synthetase [imported] - Nostoc sp. (strain PCC 7120) ISPT2_NOSS1 - Isoprenyl transferase 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uppS2 PE=3 SV=1	253.0	[0..42]	[257..7]
gi\|77405648, gi\|... - gi\|77405648\|ref\|ZP_00782736.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae H36B], gi... gi\|76787788, gi\|... - gi\|76787788\|ref\|YP_330469.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae A909], gi\|7... gi\|77412295, gi\|... - gi\|77412295\|ref\|ZP_00788610.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae CJB111], ...	252.0	[0..47]	[257..5]
gi\|32029165, gi\|... - gi\|32029165\|ref\|ZP_00132229.1\| COG0020: Undecaprenyl pyrophosphate synthase [Haemophilus somnus 2336... gi\|112823169, gi... - gi\|113461126\|ref\|YP_719194.1\| undecaprenyl pyrophosphate synthetase [Haemophilus somnus 129PT], gi\|1...	252.0	[0..51]	[257..3]
gi\|170714048, gi... - gi\|170714048\|gb\|EDT26230.1\| undecaprenyl diphosphate synthase [Clostridium perfringens CPE str. F496... gi\|110676017, gi... - gi\|110801370\|ref\|YP_696383.1\| undecaprenyl diphosphate synthase [Clostridium perfringens ATCC 13124]... gi\|182380984, gi... - gi\|182380984\|gb\|EDT78463.1\| undecaprenyl diphosphate synthase [Clostridium perfringens NCTC 8239], g... ISPT_CLOPE - Isoprenyl transferase OS=Clostridium perfringens (strain 13 / Type A) GN=uppS PE=3 SV=1 gi\|169299227, gi... - gi\|169342721\|ref\|ZP_02863762.1\| undecaprenyl diphosphate synthase [Clostridium perfringens C str. JG... gi\|177907477, gi... - gi\|182627140\|ref\|ZP_02954855.1\| undecaprenyl diphosphate synthase [Clostridium perfringens D str. JG... gi\|110803535, gi... - gi\|110803535\|ref\|YP_698983.1\| undecaprenyl diphosphate synthase [Clostridium perfringens SM101], gi\|... gi\|168208113, gi... - gi\|170660606\|gb\|EDT13289.1\| undecaprenyl diphosphate synthase [Clostridium perfringens E str. JGS198... UPPS_CLOPE - Undecaprenyl pyrophosphate synthase OS=Clostridium perfringens GN=uppS PE=3 SV=1 gi\|170710581, gi... - gi\|170710581\|gb\|EDT22763.1\| undecaprenyl diphosphate synthase [Clostridium perfringens B str. ATCC 3...	252.0	[0..50]	[257..14]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDDIFFYLA LWVIQSVYGA WDWAKNWVFW TCSYLLNFLY HHHCSRDLIR RDTKKLKKKP  60
   61 KHIAVIIECV EDGGIEGLIH DACELSAWCV CSNIRELTIY ERKGFLKQSP EAVEKAIYSH 120
  121 LPFYLGGDKC TVHVTNPCSP DEKNQNDCVD LKVHLIAKED GRDAIIDLTR GLADLCTKKV 180
  181 ISSTQVTLEL IDKELKESVI PEPDLLIIFA PLLKLQGFPP WQLRLCEIFH DPILYTTNYL 240
  241 TFFKALVHYS NAEMRLGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.39794
Match:	1jp3A
Description:	Undecaprenyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	1.42376896518855	bayes_pls_golite062009
di-trans,poly-cis-decaprenylcistransferase activity	1.40194046037281	bayes_pls_golite062009
prenyltransferase activity	1.2102902082955	bayes_pls_golite062009
catalytic activity	0.878978773660153	bayes_pls_golite062009
dehydrodolichyl diphosphate synthase activity	0.761527128946352	bayes_pls_golite062009
binding	0.747530931796963	bayes_pls_golite062009
protein binding	0.331797220769091	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	0.256467886977999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: