| Protein: | usp101 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 261 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for usp101.
| Description | E-value | Query Range |
Subject Range |
|
|
161.0 | [0..7] | [261..205] |
|
|
161.0 | [0..7] | [261..214] |
|
Region A: Residues: [1-180] |
1 11 21 31 41 51
| | | | | |
1 MAEKLPAPLL ALFAPRPPLR YLPPMDVPPE KRSTPRVSGI AKYLKYAQSH DQQYHPTESL 60
61 EEKRLRLRDE KQKQQRERLR SMIKVWDPDH DRHVIGDPYK TMFLSRLSYD TKESDIEREF 120
121 TRYGPIERIR VVRNKVTGKS MGYAFVVFER ERDLKVAYKA SAGLMLNGRR IVVDVERGRT 180
181
|
| Detection Method: |  |
| Confidence: | 28.69897 |
| Match: | 1fxlA |
| Description: | Hu antigen D (Hud) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| U1 snRNA binding | 4.22094068431436 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [181-261] |
1 11 21 31 41 51
| | | | | |
1 VKGWLPRKLG GGLGGRHYTK ERPRRERGSR FRGDSGFRGG YRGGFRKSSG GGSRFGRGPT 60
61 RSSHSSDYGG RDSSPKRRRY N
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
