YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC19G7.02
Organism:	Schizosaccharomyces pombe
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC19G7.02.

Description	E-value	Query Range	Subject Range
gi\|19888339, gi\|... - gi\|20095063\|ref\|NP_614910.1\| branched-chain amino acid aminotransferase [Methanopyrus kandleri AV19]...	245.0	[0..1]	[231..30]
gi\|152975241, gi... - gi\|89201079\|ref\|ZP_01179826.1\| Branched-chain amino acid aminotransferase I [Bacillus cereus subsp. ...	243.0	[0..1]	[231..28]
gi\|42736923, gi\|... - gi\|42781002\|ref\|NP_978249.1\| branched-chain amino acid aminotransferase [Bacillus cereus ATCC 10987]...	240.0	[0..1]	[231..28]
ILVE_ARCFU - Putative branched-chain-amino-acid aminotransferase OS=Archaeoglobus fulgidus GN=ilvE PE=3 SV=1 ILVE_ARCFU - Putative branched-chain-amino-acid aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / V...	239.0	[0..1]	[230..26]
gi\|110602591, gi... - gi\|110602591\|ref\|ZP_01390668.1\| branched-chain amino acid aminotransferase [Methanoculleus marisnigr...	239.0	[0..1]	[225..64]
gi\|52349196, gi\|... - gi\|52786694\|ref\|YP_092523.1\| branched-chain amino acid aminotransferase [Bacillus licheniformis ATCC...	239.0	[0..1]	[225..31]
gi\|146295873, gi... - gi\|82499813\|ref\|ZP_00885249.1\| Branched-chain amino acid aminotransferase I [Caldicellulosiruptor sa...	239.0	[0..1]	[231..28]
gi\|47565573, gi\|... - gi\|47565573\|ref\|ZP_00236614.1\| branched-chain amino acid aminotransferase [Bacillus cereus G9241], g...	238.0	[0..1]	[231..28]
gi\|118477308, gi... - gi\|118477308\|ref\|YP_894459.1\| branched-chain amino acid aminotransferase [Bacillus thuringiensis str... gi\|225785709, gi... - gi\|225863752\|ref\|YP_002749130.1\| branched-chain amino acid aminotransferase [Bacillus cereus 03BB102... gi\|227815331, gi... - gi\|227815331\|ref\|YP_002815340.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str.... gi\|228826527, gi... - gi\|228933170\|ref\|ZP_04096027.1\| Branched-chain amino acid aminotransferase [Bacillus thuringiensis s... gi\|165869366, gi... - gi\|165869366\|ref\|ZP_02214025.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. ... gi\|228599370, gi... - gi\|229184081\|ref\|ZP_04311292.1\| Branched-chain amino acid aminotransferase [Bacillus cereus BGSC 6E1... gi\|167638721, gi... - gi\|167638721\|ref\|ZP_02396996.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. ... gi\|229603811, gi... - gi\|229603811\|ref\|YP_002866265.1\| branched-chain-amino-acid transaminase [Bacillus anthracis str. A02... gi\|170686109, gi... - gi\|170686109\|ref\|ZP_02877331.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. ... gi\|254684448 - gi\|254684448\|ref\|ZP_05148308.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. ... gi\|49477401, gi\|... - gi\|49477401\|ref\|YP_036022.1\| branched-chain amino acid aminotransferase [Bacillus thuringiensis sero... gi\|254723975 - gi\|254723975\|ref\|ZP_05185761.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. ... gi\|52143569, gi\|... - gi\|52143569\|ref\|YP_083260.1\| branched-chain amino acid aminotransferase [Bacillus cereus E33L], gi\|5... gi\|254734750 - gi\|254734750\|ref\|ZP_05192462.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. ... gi\|47502288, gi\|... - gi\|47527140\|ref\|YP_018489.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. 'Am... gi\|254755401 - gi\|254755401\|ref\|ZP_05207435.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. ... gi\|49184726, gi\|... - gi\|49184726\|ref\|YP_027978.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. Ste... gi\|254759939 - gi\|254759939\|ref\|ZP_05211963.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. ... gi\|65319168, gi\|... - gi\|65319168\|ref\|ZP_00392127.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|30256118, gi\|... - gi\|30261890\|ref\|NP_844267.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. Ame... gi\|170707344, gi... - gi\|170707344\|ref\|ZP_02897799.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. ... gi\|172083570, gi... - gi\|177650426\|ref\|ZP_02933393.1\| branched-chain amino acid aminotransferase [Bacillus anthracis str. ... gi\|190562372, gi... - gi\|190566237\|ref\|ZP_03019155.1\| branched-chain amino acid aminotransferase [Bacillus anthracis Tsian... gi\|195993978, gi... - gi\|196033544\|ref\|ZP_03100956.1\| branched-chain amino acid aminotransferase [Bacillus cereus W], gi\|1... gi\|196041272, gi... - gi\|196041272\|ref\|ZP_03108567.1\| branched-chain amino acid aminotransferase [Bacillus cereus NVH0597-... gi\|196024040, gi... - gi\|196045038\|ref\|ZP_03112271.1\| branched-chain amino acid aminotransferase [Bacillus cereus 03BB108]... gi\|218903004, gi... - gi\|218903004\|ref\|YP_002450838.1\| branched-chain amino acid aminotransferase [Bacillus cereus AH820],...	238.0	[0..1]	[231..28]
gi\|218542314, gi... - gi\|218896819\|ref\|YP_002445230.1\| branched-chain amino acid aminotransferase [Bacillus cereus G9842],... gi\|74491571, gi\|... - gi\|75760934\|ref\|ZP_00740943.1\| Branched-chain amino acid aminotransferase [Bacillus thuringiensis se...	238.0	[0..1]	[231..28]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESNLFETT LYDGELFLLP SHLQRMKASA KSLGYSWPGE QYIENKLREA VQDTSMARVR  60
   61 WELSKAGDVT VQIVPIQTLE KAPYTLILDK QPSSTEKNPS CINKMTNRAI YIEAMNRNDA 120
  121 QYSKAQDVLL YNHQGFVTEA TIFNVAFHRN GQWITPSLKH GLLSGTMRKN LLENGSIHED 180
  181 DKGLLQKDNL KNGEQVLLFN SFRKVCKGVL IIQPEKACEL LKKKDSSEKL S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.30103
Match:	1i1kA
Description:	Branched-chain aminoacid aminotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.42233634542616	bayes_pls_golite062009
branched-chain-amino-acid transaminase activity	2.23160645596458	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	2.21952141862344	bayes_pls_golite062009
transaminase activity	2.19756519502252	bayes_pls_golite062009
transferase activity	1.87055521105017	bayes_pls_golite062009
pyridoxal phosphate binding	0.88298371550629	bayes_pls_golite062009
vitamin B6 binding	0.88298371550629	bayes_pls_golite062009
cofactor binding	0.0813158351261423	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: