Protein: | vps3 |
Organism: | Schizosaccharomyces pombe |
Length: | 910 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps3.
Description | E-value | Query Range |
Subject Range |
|
571.0 | [0..6] | [910..46] |
|
564.0 | [0..6] | [910..8] |
|
561.0 | [0..6] | [910..8] |
|
558.0 | [0..6] | [910..8] |
|
557.0 | [0..6] | [910..8] |
|
557.0 | [0..6] | [910..8] |
Region A: Residues: [1-145] |
1 11 21 31 41 51 | | | | | | 1 MSDIELHESA IPKELDSPVT TIALYNNHLY FGTEGGDVFL YNFSNFQLNE SPELVKKISL 60 61 VSKSRVNRIL AMPFLGAVFI HHGSFAEVYK EDDLTQLYPS ISFKGLVEFC HPGQRIDEKS 120 121 TYLIVTNTHL KLISFQKDGI ILVKN |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [146-312] |
1 11 21 31 41 51 | | | | | | 1 ELKYPNIQTA RVNGHIVCLV TENSFELLDI LTFDTTPLFP IIKYDSENNG LMYKPMIVLH 60 61 SNEFLLITGS PKDAIGLFVD SQGNVTRSTL TFSFYPKHVF STSHYVFAIS SSSLQIIDIN 120 121 TLSLVKSINL KDDESFSFIS RLTSVHFCDR QIFSKFSAVN TASTSKT |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.487 | 0.250 | small GTPase regulator activity | b.55.1 | PH domain-like |
View | Download | 0.392 | 0.150 | protein targeting to vacuole | b.29.1 | Concanavalin A-like lectins/glucanases |
View | Download | 0.434 | 0.091 | protein targeting to vacuole | b.60.1 | Lipocalins |
View | Download | 0.433 | 0.086 | protein targeting to vacuole | d.19.1 | MHC antigen-recognition domain |
View | Download | 0.431 | 0.044 | small GTPase regulator activity | b.82.3 | cAMP-binding domain-like |
Region A: Residues: [313-910] |
1 11 21 31 41 51 | | | | | | 1 SDTIERASFS KPSFIFLTNK SWGFGAEAHF MNKLEFSITI GDIEAPLRRV SKRLRNPKKY 60 61 GITNDVAYLQ SAYLEQISAL QYWKQGQYEN SLSLLETSKI DPRVVISLYP DLYHSELSYI 120 121 AFQGVISFRK SILSVDDTVA NVLKSNELFR DTDQYTQRQM IEITKENAYI MLMRYLKNYK 180 181 KNTSISEYLL SSQRDVMLAV EHSLLLLYLN MDDLAAGTKN AKELLESGLT GVEDIKDVLI 240 241 QKKEYYLLSV LLATVRDHDG VLQTWKKLIT GDYEDRRFND GLIKIREYLV NDIEPSTFWE 300 301 FTTWLCKHDA TEGTRVLLDK TVSGSISAED VLEHLDSSQD DVLIDYLVKS NSVTHRALLL 360 361 KLCVNKLLGS LLDHNDFKNR LETAIETFRE LPCMEKPTYA QYLEQLWGDM SDFSTHLSFY 420 421 YLCSINLMEN VEEESIDKIK DILFDIHVDN LYLFPQLEHS FYKRKKNYEK ALSVLVTNIH 480 481 DYKGGEAYCL QIDDVYPQCW CNLLEKCIST GDGCSDFIKE LLYRRPFSYT LSYVCEQIPD 540 541 HWNLNLLADF LCILQKRNAE RLNESQTRLT LEKSLSQNLE ELFMAINRRN VALGKNEI |
Detection Method: | ![]() |
Confidence: | 2.12 |
Match: | 1b89A |
Description: | Clathrin heavy chain proximal leg segment |
Matching Structure (courtesy of the PDB):![]() |
Term | Confidence | Notes |
binding | 2.51063262166696 | bayes_pls_golite062009 |
protein transporter activity | 2.17038865096656 | bayes_pls_golite062009 |
protein binding | 2.0097220759196 | bayes_pls_golite062009 |
substrate-specific transporter activity | 0.68280791022469 | bayes_pls_golite062009 |
nuclear localization sequence binding | 0.65191473662737 | bayes_pls_golite062009 |
protein transmembrane transporter activity | 0.347277736469816 | bayes_pls_golite062009 |
signal sequence binding | 0.279693431859311 | bayes_pls_golite062009 |
nucleic acid binding | 0.118461769548431 | bayes_pls_golite062009 |