YRC Public Data Repository - Protein Structure Prediction

Protein:	cda1
Organism:	Schizosaccharomyces pombe
Length:	320 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cda1.

Description	E-value	Query Range	Subject Range
gi\|53727730, gi\|... - gi\|53727730\|ref\|ZP_00139143.2\| COG0726: Predicted xylanase/chitin deacetylase [Pseudomonas aeruginos...	291.0	[0..3]	[319..5]
gi\|49083565 - gi\|49083565\|gb\|AAT51062.1\| PA1517 [synthetic construct]	291.0	[0..3]	[319..5]
gi\|107100948 - gi\|107100948\|ref\|ZP_01364866.1\| hypothetical protein PaerPA_01001978 [Pseudomonas aeruginosa PACS2] gi\|194545598, gi... - gi\|84321703\|ref\|ZP_00970057.1\| COG0726: Predicted xylanase/chitin deacetylase [Pseudomonas aeruginos... gi\|218772835, gi... - gi\|218892607\|ref\|YP_002441476.1\| putative polysaccharide deacetylase [Pseudomonas aeruginosa LESB58]... gi\|9947474, gi\|1... - gi\|9947474\|gb\|AAG04906.1\|AE004580_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|11347793 - pir\|\|H83455 conserved hypothetical protein PA1517 [imported] - Pseudomonas aeruginosa (strain PAO1)	291.0	[0..3]	[319..5]
gi\|150959317, gi... - gi\|94415073\|ref\|ZP_01294922.1\| hypothetical protein PaerP_01003181 [Pseudomonas aeruginosa PA7], gi\|...	290.0	[0..3]	[319..5]
gi\|254239866, gi... - gi\|84328431\|ref\|ZP_00976438.1\| COG0726: Predicted xylanase/chitin deacetylase [Pseudomonas aeruginos...	287.0	[0..3]	[319..5]
gi\|82739340, gi\|... - gi\|82739340\|ref\|ZP_00902146.1\| polysaccharide deacetylase family protein [Pseudomonas putida F1], gi...	287.0	[0..3]	[319..5]
gi\|24986003, gi\|... - gi\|26990977\|ref\|NP_746402.1\| polysaccharide deacetylase family protein [Pseudomonas putida KT2440], ...	286.0	[0..3]	[319..5]
gi\|66045053, gi\|... - gi\|66045053\|ref\|YP_234894.1\| polysaccharide deacetylase [Pseudomonas syringae pv. syringae B728a], g...	284.0	[0..3]	[318..5]
gi\|28854070, gi\|... - gi\|28870821\|ref\|NP_793440.1\| polysaccharide deacetylase family protein [Pseudomonas syringae pv. tom... tr\|Q87YX6\|Q87YX6... - Polysaccharide deacetylase family protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPT...	283.0	[0..3]	[318..5]
gi\|48732009, gi\|... - gi\|77457933\|ref\|YP_347438.1\| polysaccharide deacetylase [Pseudomonas fluorescens Pf0-1], gi\|77381936...	283.0	[0..3]	[319..5]

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Predicted Domain #1

Region A:
Residues: [1-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYETRDLTGN AGKPVDTNPW PNNSKIAVSF VVNYEEGGER SLLYEDEGFE TFLTEAGLMP  60
   61 FPNRPVRERS IESCFEYGSR CGFWRILNLF KKHKVPFTCW AIGQAVEKNP VVVGAMEEAG 120
  121 CEVGSHSHRW INYEGVPPET EYEHIKKSVQ AIQKASPSNS APRSWYTGRA SLNTRKLVCQ 180
  181 VYKDLGLPQP FDSDEYNDDY PYWVADPLAS KPGAEDDKGL LIVPYTLEVN DMKYAVAPGF 240
  241 CNSDDFYTYA RDAFDVLYEE GLEGAPKMMT IGLHCRLTGR PGRFRGLQKL MEHITSKEGV 300
  301 WVATREQIAQ AWSAKHPYKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.69897
Match:	1z7aA
Description:	Crystal structure of conserved hypothetical protein from Pseudomonas aeruginosa PAO1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chitin deacetylase activity	10.7874217761055	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	3.74440177036934	bayes_pls_golite062009
hydrolase activity	3.36553865279318	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	3.03068569473537	bayes_pls_golite062009
deacetylase activity	2.13567346052761	bayes_pls_golite062009
binding	1.72578164002896	bayes_pls_golite062009
mannosidase activity	1.21389958583146	bayes_pls_golite062009
catalytic activity	1.17882014774774	bayes_pls_golite062009
protein binding	0.394432087623352	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	0.133068529747333	bayes_pls_golite062009
alpha-mannosidase activity	0.127808084365176	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: